Genome-wide identification of the CCCH gene family in rose (Rosa chinensis Jacq.) reveals its potential functions

Abstract

View related articlesView Crossmark dataGenome-wide identification of the CCCH gene family in rose (Rosa chinensis Jacq.) reveals its potential functions

Genome-wide analysis and identification of stress-responsive genes of the CCCH zinc finger family in Capsicum annuum L.

“…These proteins are rather unusual in that they can regulate the expression of genes by binding to mRNA in addition to DNA ( Kim et al., 2014 ; Qin et al., 2014 ). Functional analyses of CCCH genes in Arabidopsis , rice, maize, poplar, alfalfa ( Medicago truncatula ), citrus, tomato, banana, cabbage, soybean, rose, tobacco, and other plants have been conducted ( Wang et al., 2008 ; Chai et al., 2012 ; Peng et al., 2012 ; Zhang et al., 2013 ; Liu et al., 2014 ; Xu, 2014 ; Mazumdar et al., 2017 ; Pi et al., 2018 ; Hu and Zuo, 2021 ; Li et al., 2021 ; Tang C. et al., 2022 ).…”

“…The expression levels of CCCH genes in pepper varied significantly among tissues and developmental stages ( Chai et al., 2012 ; Li et al., 2021 ). Only the expression of PEPTY24, PEPTY29 , and PEPTY54 was up-regulated in flowers.…”

“…A total of 68, 67, 68, 91, 34, 62, 80, 89, 103, 116, 31, and 86 CCCH zinc finger family genes have been identified in Arabidopsis ( Wang et al., 2008 ), rice ( Wang et al., 2008 ), maize ( Peng et al., 2012 ), poplar ( Chai et al., 2012 ), Medicago truncatula ( Zhang et al., 2013 ), citrus ( Liu et al., 2014 ), tomato ( Xu, 2014 ), banana ( Mazumdar et al., 2017 ), cabbage ( Brassica rapa ) ( Pi et al., 2018 ), soybean ( Hu and Zuo, 2021 ), rose ( Li et al., 2021 ), and tobacco ( Tang C. et al., 2022 ), respectively. Although CCCH zinc finger proteins play an important role in many aspects of plant growth and development, no systematic studies have been conducted to analyze and identify members of the CCCH gene family in pepper to date.…”

Genome-Wide Identification and Expression Analysis of C3H Zinc Finger Family in Potato (Solanum tuberosum L.)

“…In this study, we identified and characterized 50 C3H genes from the potato genome, which were similar to those identified in other Solanaceae species, Solanum lycopersicum (47 members) and Capsicum annuum (57 members) [ 47 , 53 ]. The number of C3H genes varies among plant species, for example, rose (31 members) and Medicago truncatula (34 members) have fewer C3H members, and the number of C3H genes in Brassica rapa (103 members) and Glycine max (116 members) are significantly higher than those in other species [ 47 , 52 , 54 , 55 , 56 ]. Gene duplication is essential for the adaptation and evolution of organisms, and segmental and tandem duplications are considered to play important roles in the expansion of plant gene families [ 57 ].…”