Genomic Islands in the Full-Genome Sequence of an NAD-Hemin-Independent Avibacterium paragallinarum Strain Isolated from Peru

Abstract

Here, we report the full-genome sequence of an NAD-hemin-independent Avibacterium paragallinarum serovar C-2 strain, FARPER-174, isolated from layer hens in Peru. This genome contained 12 potential genomic islands that include ribosomal protein-coding genes, a nadR gene, hemocin-coding genes, sequences of fagos, an rtx operon, and drug resistance genes.

Complete Genome Sequences of Seven Avibacterium paragallinarum Isolates from Poultry Farms in Pennsylvania, USA

“…FastANI (11) was used to calculate the average nucleotide identity (ANI) values between the genome sequences. The ANI values between all of the genomes reported here are above 99.99% and are closer to those of two genomes from Peru, strains 72 (ANI, 99.86%) and FARPER-174 (ANI, 99.74%) (12,13), and strain AVPG2015 from Mexico (ANI, 99.88%). Data availability.…”

Prevalence and genomic-based antimicrobial resistance analysis of Avibacterium paragallinarum isolates in Guangdong Province, China

“…The isolates predominantly exhibited the characteristic need for nicotinamide adenine dinucleotide ( NAD ) and carbon dioxide ( CO 2 ) in the surrounding atmosphere to support their growth ( Guo et al, 2022 ). Additionally, there have been reports that NAD-independent isolates and isolates with atypical growth characteristics were found ( Tataje-Lavanda et al, 2019 ). The identification of A. paragallinarum can be achieved through the utilization of conventional and real-time PCR techniques.…”

Development and Validation of PCR Diagnostic Assays for Detection of Avibacterium paragallinarum and Ornithobacterium rhinotracheale

“…Supplementary Materials:The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/vetsci11010007/s1, TableS1: The sample panel of bacterial isolates from the research collection of ARRIAH; FigureS1: Multiple alignment of lysS gene sequences in the region of annealing of primers and probe; TableS2: The DNA sample panel from the research collection of the Department of Biotechnology at VGNKI; FigureS2: Multiple alignment of rnaP gene sequences in the region of annealing of primers and probe; TableS3: List of whole-genome sequences of A. paragallinarum isolates in the NCBI refseq database[34][35][36][37][38][39][40][41][42][43][44][45]; TableS4: List of wholegenome sequences of O. rhinotracheale isolates in the NCBI refseq database[46][47][48]; TableS5: Test results for clinical samples of A paragallinarum (A.pg) (fragments of chicken beaks and sinuses); TableS6: Test results for clinical samples of O. rhinotracheale (ORT) (chicken tracheal homogenate).…”