Antimicrobial peptides are considered as effector immune molecules and during last decades, many workers have demonstrated the significant role and mechanism of hepcidin (hamp), an antimicrobial peptide in regulating the absorption, transport, storage and mobilization of iron. In the present work, hepcidin cDNA was cloned, sequenced and characterized in an important medium carp species, Puntius sarana, which is enlisted as a vulnerable species. The tissue specificity of hepcidin was checked in major organs of this species, and expression profile of hepcidin transcript was analyzed during ontogeny and infection against a common bacterial pathogen, Aeromonas hydrophila. Further, the antimicrobial activity of hepcidin was investigated against various Gram positive and negative bacterial strains, using the synthetic mature peptide of P. sarana. The obtained hamp amplicon produced a predicted ORF of 279 bases having 92 amino acids and the nucleotide sequence showed 99 % identity with zebrafish hepcidin. During the ontogeny, the hamp gene appeared at 6 h postfertilization and its expression remained constant towards 21 days post-fertilization and was intensely observed in liver as compared to other organs. After artificial exposure to A. hydrophila, up-regulation of the gene was marked at 3 and 6 h post-challenge, however, the same was down regulated after 24 h onwards. The synthetic hepcidin peptide exhibited broad spectrum antibacterial activity against important fish pathogens at a concentration of 17.30 lM. This preliminary study revealed that hepcidin might be playing an important role in innate defence of this fish species.