Genomic Survey of Heat Shock Proteins in Liriodendron chinense Provides Insight into Evolution, Characterization, and Functional Diversities

Abstract

Heat shock proteins (HSPs) are conserved molecular chaperones whose main role is to facilitate the regulation of plant growth and stress responses. The HSP gene family has been characterized in most plants and elucidated as generally stress-induced, essential for their cytoprotective roles in cells. However, the HSP gene family has not yet been analyzed in the Liriodendron chinense genome. In current study, 60 HSP genes were identified in the L. chinense genome, including 7 LchiHSP90s, 23 LchiHSP70s, and 30 LchiHSP20s. We investigated the phylogenetic relationships, gene structure and arrangement, gene duplication events, cis-acting elements, 3D-protein structures, protein–protein interaction networks, and temperature stress responses in the identified L. chinense HSP genes. The results of the comparative phylogenetic analysis of HSP families in 32 plant species showed that LchiHSPs are closely related to the Cinnamomum kanehirae HSP gene family. Duplication events analysis showed seven segmental and six tandem duplication events that occurred in the LchiHSP gene family, which we speculated to have played an important role in the LchiHSP gene expansion and evolution. Furthermore, the Ka/Ks analysis indicated that these genes underwent a purifying selection. Analysis in the promoter region evidenced that the promoter region LchiHSPs carry many stress-responsive and hormone-related cis-elements. Investigations in the gene expression patterns of the LchiHSPs using transcriptome data and the qRT-PCR technique indicated that most LchiHSPs were responsive to cold and heat stress. In total, our results provide new insights into understanding the LchiHSP gene family function and their regulatory mechanisms in response to abiotic stresses.

Genome‐wide identification and expression analysis of heat shock protein gene family in cassava

“…The evolutionary fate of duplicated genes is mainly determined by selective pressures (Jacquemin et al., 2014), and most duplicated MeHsp s have undergone purification selection. Similar findings have been confirmed in many other species (X. Chen et al., 2021; Ke et al., 2022). Synteny analysis revealed the presence of syntenic Hsp genes in Arabidopsis , rice, yam, P. trichocarpa , and rubber tree.…”

“…Similar findings have been confirmed in many other species (X. Chen et al, 2021;Ke et al, 2022). Synteny analysis revealed the presence of syntenic Hsp genes in Arabidopsis, rice, yam, P. trichocarpa, and rubber tree.…”