The main factors influencing the shape of the beach, shoreline and seabed include undulation, wind and coastal currents. These phenomena cause continuous and multidimensional changes in the shape of the seabed and the Earth’s surface, and when they occur in an area of intense human activity, they should be constantly monitored. In 2018 and 2019, several measurement campaigns took place in the littoral zone in Sopot, related to the intensive uplift of the seabed and beach caused by the tombolo phenomenon. In this research, a unique combination of bathymetric data obtained from an unmanned surface vessel, photogrammetric data obtained from unmanned aerial vehicles and ground laser scanning were used, along with geodetic data from precision measurements with receivers of global satellite navigation systems. This paper comprehensively presents photogrammetric measurements made from unmanned aerial vehicles during these campaigns. It describes in detail the problems in reconstruction within the water areas, analyses the accuracy of various photogrammetric measurement techniques, proposes a statistical method of data filtration and presents the changes that occurred within the studies area. The work ends with an interpretation of the causes of changes in the land part of the littoral zone and a summary of the obtained results.