Utilizing a PCR-based subtractive cDNA approach, we demonstrated that the marine diatom Thalassiosira pseudonana exhibits a rapid response at the gene level to elevated concentrations of copper and that this response attenuates over 24 h of continuous exposure. A total of 16 copper-induced genes were identified, 11 of which were completely novel; however, many of the predicted amino acid sequences had characteristics suggestive of roles in ameliorating copper toxicity. Most of the novel genes were not equivalently induced by H 2 O 2 -or Cd-induced stress, indicating specificity in response. Two genes that could be assigned functions based on homology were also induced under conditions of general cellular stress. Half of the identified genes were located within two inverted repeats in the genome, and novel genes in one inverted repeat had mRNA levels induced by ϳ500-to 2,000-fold by exposure to copper for 1 h. Additionally, some of the inverted repeat genes demonstrated a dose-dependent response to Cu, but not Cd, and appear to belong to a multigene family. This multigene family may be the diatom functional homolog of metallothioneins.Copper (Cu) is an essential micronutrient required as a redox cofactor in a number of enzymes, including cytochrome oxidase, plastocyanin, and Cu/Zn superoxide dismutase. However, due to the redox chemistry of Cu, it is a potent toxin at elevated concentrations, and organisms utilize homeostatic mechanisms to tightly control both the intracellular concentration and activity of Cu (26).One means of Cu detoxification includes the synthesis of metal-binding ligands. The primary types of described metalbinding ligands are metallothioneins and phytochelatins, which are cysteine-rich protein molecules found in the plant and animal kingdoms (9), with metallothioneins also occurring in the prokaryotic genus Synechococcus (36). The amino acid sequences of metallothioneins are gene encoded, while phytochelatins are enzymatically produced by phytochelatin synthase. Although both of these ligands have important roles in metal detoxification, additional functions have not been ruled out, including roles in essential metal ion homeostasis. (For a review of phytochelatins and metallothioneins, see reference 9.)