(1) Background: Cyperaceae weeds have become a major type of weed in local paddy fields in China. (2) Methods: We assessed the impact of environmental factors, including temperature, light, salinity, water stress and soil depth, on the germination and emergence of three dominant Cyperaceae weeds: Cyperus difformis L., C. iria L. and Fimbristylis littoralis Gaudich. Using the dish dipping method, the performances of the pre- and post-emergence herbicides commonly used in paddy fields on three Cyperaceae weeds were evaluated using the pot method. (3) Results: The seeds optimally germinated at 35 °C in constant conditions and 25 °C/40 °C in alternating conditions. The seeds of the three Cyperaceae weeds were sensitive to light and could not germinate under dark conditions. The germination rate of the three weeds decreased with the increase in the NaCl concentration and water potential; the three weeds could not germinate at a 320 mmol·L−1 NaCl concentration and −0.1 MPa water potential. When the pH levels were 4 to 9, the germination rates of the three weeds were all greater than 80%. The burial depths to inhibit 50% of the emergence of C. difformis, C. iria and F. littoralis were 0.27, 1.06 and 0.42 cm, respectively. The control efficacy of the pre-emergence herbicides of pretilachlor, butachlor and oxyfluorfen on the three weeds were all above 90% at the recommended dose in the field. Halosulfuron-methyl, florpyrauxifen-benzyl and bentazone could effectively control the three Cyperaceae weeds; their performances on the three weeds at the 3- to 4-leaf stage were all above 82%. (4) Conclusions: The three Cyperaceae weed seeds have a strong adaptability to temperature, water potential, salinity and soil depth, and these weeds are sensitive to most pre- and post-emergence herbicides. Therefore, taking Cyperaceae weed seeds into the deep soil layer by tillage or selecting appropriate herbicides according to their growth stages can effectively control Cyperaceae weeds in rice fields.