The paper investigates the dynamical behaviors of a two-species discrete predator-prey system with Crowley–Martin functional response incorporating prey refuge proportional to prey density. The existence of equilibrium points, stability of three fixed points, period-doubling bifurcation, Neimark–Sacker bifurcation, Marottos chaos, and Control Chaos are analyzed for the discrete-time domain. The time graphs, phase portraits, and bifurcation diagrams are obtained for different parameters of the model. Numerical simulations and graphics show that the discrete model exhibits rich dynamics, which also present that the system is a chaotic and complex one. This paper attempts to present a feedback control method which can stabilize chaotic orbits at an unstable equilibrium point.