Background: With the development of advanced characterization techniques, lithium-ion battery non-linearities have recently gained increased attention which can benefit battery health diagnosis and ageing mechanism identification. In comparison to conventional single sine wave-based methods, the multisine-based non-linear characterization method has the advantage of capturing the dynamic voltage response within a short testing duration, and therefore has further development potential for on-board applications. However, understanding lithium-ion battery electrochemical processes that contribute to battery non-linearities is still unclear. Methods: In this paper, the sensitivity of the Doyle–Fuller–Newman model parameters are analysed in the frequency domain to investigate the electrochemical processes that contribute to the non-linear dynamics of the voltage response. To begin with, the non-linearities of the Doyle–Fuller–Newman model with validated parameters are characterized and compared to experimental data from a commercial cell. This demonstrated a significant difference between the mathematical model and the non-linearities determined experimentally. Then, a global sensitivity analysis is applied to determine the most sensitive parameter contributing to battery non-linearities. Finally, the appropriate value of the most sensitive parameter which results in the closest non-linear response to the commercial battery is estimated through minimizing the root mean square error. Results: The results show that the charge transfer coefficient is the most sensitive parameter contributing to battery non-linearities among the Doyle–Fuller–Newman model parameters. The non-linear response of the Doyle–Fuller–Newman model is validated with good agreement with the experimental results, when the Butler–Volmer kinetic is asymmetrical due to the unequal anodic and cathodic charge transfer coefficients.