The substrate specificity of thermophilic xylose isomerase from Clostridium thenmosulfurogenes was examined by using predictions from the known crystal structure of the Arthrobacter enzyme and site-directed mutagenesis of the thermophilexylA gene. The orientation ofglucose as a substrate in the active site of the thermophilic enzyme was modeled to position the C-6 end of hexose toward His-101 in the substratebinding pocket. The locations of which (kCt/Kl,) for glucose than the wild-type enzyme of 5-and 2-fold, respectively. They also exhibited 1.5-and 3-fold higher catalytic efficiency for D-glucose than for D-xylose, respectively. These results provide evidence that alteration in substrate specificity of factitious thermophilic xylose isomerases can be achieved by designing reduced steric constraints and enhanced hydrogenbonding capacity for glucose in the substrate-binding pocket of the active site.Specificity of enzymes toward their substrates is determined in part by molecular residues that provide for binding of the substrate and that maintain substrate steric configuration in the active site. A variety of factors influence enzymesubstrate complementarity and catalytic efficiency including steric fit, charge interactions, hydrogen bonding, and hydrophobic interactions (1). Until recently, the main strategy to reveal and study the molecular basis of these factors was to determine the tertiary structure of the enzyme-substrate complexes by x-ray crystallography. Redesigning proteins by engineering of their genes is now a viable approach that complements structural studies and enables determination of amino acid substitution effects on mutant enzyme function. Thus, substrate specificity has been altered by redesigning the structural frame of an enzyme (1-4), its electrostatic network (5-8), or its hydrophobic interaction with the substrate (9). Catalytic function of an enzyme can also be changed and regulated by modifications of the physical microenvironment of its catalytic site (10, 11).Xylose isomerase (D-xylose ketol-isomerase; EC 5.3.1.5) converts D-xylose to D-xylulose during xylose metabolism in various microorganisms (12). This enzyme also catalyzes the conversion of D-glucose to D-fructose in vitro and has been used as an industrial biocatalyst for production of high fructose corn syrup (13). Xylose isomerase displays lower kcat and higher Km values for glucose than those for xylose, and it requires different metal ions for enzyme catalysis on these substrates (i.e., Mn2+ for xylose and Co2+ for glucose) (14-16).The catalytic mechanism for xylose isomerase was originally believed to involve histidine-directed general base catalysis (17). Currently, an alternative mechanism of catalysis has been proposed based on results of x-ray crystallographic studies on Arthrobacter or Streptomyces enzymes (18-21) and biochemical properties exhibited by thermophilic enzymes obtained by site-directed mutagenesis of the xylA gene from Clostridium thermosulfurogenes (22).The enzymatic interconversion of...