Vacuolar H؉ -ATPases (V-ATPases) are highly conserved ATP-driven proton pumps responsible for acidification of intracellular compartments. V-ATPase proton transport energizes secondary transport systems and is essential for lysosomal/vacuolar and endosomal functions. These dynamic molecular motors are composed of multiple subunits regulated in part by reversible disassembly, which reversibly inactivates them. Reversible disassembly is intertwined with glycolysis, the RAS/cyclic AMP (cAMP)/ protein kinase A (PKA) pathway, and phosphoinositides, but the mechanisms involved are elusive. The atomic-and pseudoatomic-resolution structures of the V-ATPases are shedding light on the molecular dynamics that regulate V-ATPase assembly. Although all eukaryotic V-ATPases may be built with an inherent capacity to reversibly disassemble, not all do so. V-ATPase subunit isoforms and their interactions with membrane lipids and a V-ATPase-exclusive chaperone influence V-ATPase assembly. This minireview reports on the mechanisms governing reversible disassembly in the yeast Saccharomyces cerevisiae, keeping in perspective our present understanding of the V-ATPase architecture and its alignment with the cellular processes and signals involved.
V acuolar Hϩ -ATPases (V-ATPases) are ATP-driven proton pumps distributed throughout the endomembrane system of all eukaryotic cells (1, 2). V-ATPase proton transport acidifies organelles and energizes secondary transport systems. Zymogen activation, protein processing and trafficking, and receptor-mediated endocytosis are fundamental cellular processes that require V-ATPase activity. Cells specialized for active proton secretion express also V-ATPases at the plasma membrane. Proton transport by plasma membrane V-ATPases in osteoclasts, epididymal clear cells, and renal intercalated cells is necessary for bone resorption, sperm maturation, and maintenance of the systemic acidbase balance, respectively (3, 4). V-ATPase has been implicated in several pathological states, including osteopetrosis, distal renal tubular acidosis, male infertility, and cancers (2). Not surprisingly, studies of V-ATPase function and regulation are increasing, as is our knowledge of these dynamic proteins.V-ATPase structure and function are highly conserved and well characterized in Saccharomyces cerevisiae (referred to here as yeast). Lack of V-ATPase function leads to a conditionally lethal phenotype that is characterized by pH sensitivity in yeast; complete lack of V-ATPase function is lethal in higher eukaryotes (5). Recent atomic-and pseudo-atomic-resolution structures of VATPase and its subunits have helped shed light on the molecular dynamics that regulate V-ATPase function (6, 7). V-ATPases are large multisubunit complexes structurally organized into two major domains, V 1 and V o (Fig. 1). Eight peripheral subunits (A to H) form the V 1 domain, where ATP hydrolysis takes place. Six subunits (a, c, c=, cЉ, d, and e) comprise V o , the membrane intrinsic domain that forms the path for proton transport. An impo...