Central infected zone tissue of soybean (Glycine max L. Merr.) nodules was fractionated into separate subcellular compartments using density gradient centrifugation in nonaqueous solvents to better understand how exposure to Ar:O 2 (80:20%, v/v) atmosphere affects C and N metabolism, and to explore a potential role for adenylates in regulating O 2 diffusion. When nodules were switched from air to Ar:O 2 , adenylate energy charge (AEC) in the plant cytosol rose from 0.63 6 0.02 to 0.73 6 0.02 within 7 min and to 0.80 6 0.01 by 60 min. In contrast, AEC of the mitochondrial compartment of this central zone tissue remained high (0.80 6 0.02 to 0.81 6 0.02) following Ar treatment while that of the bacteroid compartment was unchanged, at 0.73 6 0.02, after 7 min, but declined to 0.57 6 0.03 after 60 min. These results were consistent with a simulation model that predicted Ar:O 2 exposure would first reduce ATP demand for ammonia assimilation and rapidly increase cytosolic AEC, before the Ar:O 2 -induced decline mediated by a decrease in nodule O 2 permeability reduces bacteroid AEC. The possibility that adenylates play a key, integrating role in regulating nodule permeability to oxygen diffusion is discussed.In active, N 2 fixing nodules, respiration and N 2 ase activity are O 2 limited and can be increased slightly, but significantly (2%-20%), by gradual increases in the external partial pressure of O 2 (pO 2 ; Hunt et al., 1989). However, following treatments such as defoliation, detopping, stem girdling, nitrate fertilization, or exposure to C 2 H 2 or Ar:O 2 that are known to inhibit nitrogenase activity and nodule respiration, nodules respond to increases in pO 2 with much larger enhancements of nitrogenase activity (Hartwig et al., 1987;Vessey et al., 1988;Denison et al., 1992;de Lima et al., 1994). These studies, together with measurements of infected cell O 2 concentration and nodule permeability (Denison and Layzell, 1991;King and Layzell, 1991), showed that the treatments apparently down-regulate metabolism by reducing the supply of O 2 through a decrease in the gaseous permeability of nodules.The mechanism that nodules use to regulate the diffusion barrier is unknown, but is correlated with the adenylate ratios (ATP-ADP; adenylate energy charge, AEC ¼ ð½ATP10:5½ADPÞ=ð½ATP1½ADP1½AMPÞ), in most, but not all treatments known to induce severe O 2 limitation of nodule metabolism (de Lima et al., 1994). For example, exposure of nodules to 10% O 2 (2-3 min), stem girdling (3 h), or nitrate fertilization (48 h) decreased nodule AEC values by approximately 0.12 units (de Lima et al., 1994). However, 60 min exposure of soybean (Glycine max) nodules to Ar:O 2 did not change the nodule AEC values (de Lima et al., 1994), even though the treatment dramatically lowered infected cell [O 2 ] (King and Layzell, 1991), and N 2 ase activity could be recovered at elevated pO 2 . Taken at face value, this result does not support the idea that adenylate pools or adenylate ratios in the infected cells are involved in the mechanism...