Gramella aquimixticola sp. nov., isolated from water of an estuary environment

Park, Sooyeon; Kim, Sona; Jung, Yong-Taek; Yoon, Jung‐Hoon

doi:10.1099/ijsem.0.000567

Cited by 12 publications

(6 citation statements)

References 28 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…Moreover, strain ASW11-100 T contained less summed feature 3 (10.3 %) than detected in G. forsetii (14.9%). The sole respiratory quinone detected in ASW11-100 T was MK-6, which was consistent with those of all species of the genus Gramella [12][13][14][15][16][17][18][19][20][21][22][23][24][25][26][27][28][29][30].…”

Section: Physiology and Chemotaxonomysupporting

confidence: 73%

“…forsetii (14.9%). The sole respiratory quinone detected in ASW11-100 T was MK-6, which was consistent with those of all species of the genus Gramella [12–30]. The polar lipid profile (Fig.…”

Section: Physiology and Chemotaxonomysupporting

confidence: 72%

“…Its members have been isolated from marine organisms [12][13][14] and various marine environments including seawater [15][16][17][18][19], marine sediments [20][21][22][23][24], tidal flats [25][26][27][28], foreshore soil [29] and solar salterns [30]. In general, cells of the genus are Gram-negative, rod-shaped, aerobic and motile by gliding, containing menaquinone-6 (MK-6) as the sole respiratory quinone and DNA G+C contents of 36.6-48.0 mol % [12][13][14][15][16][17][18][19][20][21][22][23][24][25][26][27][28][29][30]. During a screening of culturable bacteria from a tidal flat sediment in the Yellow Sea, PR China, a yellow-colony-forming bacterial strain, designated ASW11-100 T , was isolated and characterized.…”

Section: Introductionmentioning

confidence: 99%

“…At the time of writing, the genus Gramella comprises 19 species with validly published names (https://lpsn.dsmz.de/genus/gramella). Its members have been isolated from marine organisms [12][13][14] and various marine environments including seawater [15][16][17][18][19], marine sediments [20][21][22][23][24], tidal flats [25][26][27][28], foreshore soil [29] and solar salterns [30]. In general, cells of the genus are Gram-negative, rod-shaped, aerobic and motile by gliding, containing menaquinone-6 (MK-6) as the sole respiratory quinone and DNA G+C contents of 36.6-48.0 mol % [12][13][14][15][16][17][18][19][20][21][22][23][24][25][26][27][28][29][30].…”

Section: Introductionmentioning

confidence: 99%

See 3 more Smart Citations

Gramella sediminis sp. nov., isolated from a tidal flat of the Yellow Sea

Niu

Dong

Guan

et al. 2022

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

A novel species of the genus Gramella , designated ASW11-100T, was isolated from a tidal flat sediment in the Yellow Sea, PR China. Phylogenetic analysis based on 16S rRNA gene sequences and single-copy orthologous clusters revealed that strain ASW11-100T belonged to the genus Gramella , and exhibited 16S rRNA gene sequence similarities of 98.9, 98.8 and 98.7 % to Gramella sabulilitoris HSMS-1T, Gramella sediminilitoris GHTF-27T and Gramella forsetii KT0803T, respectively. The genome of strain ASW11-100T harbours 2950 protein-coding genes and 105 carbohydrate-active enzymes including 38 glycoside hydrolases. Seventeen of the glycoside hydrolases are organized in five distinct polysaccharide utilization loci, which are predicted to involve in the degradation of starch, glucans, arabinoxylans, arabinomannan, arabinans and arabinogalactans. The genomic DNA G+C content was 37.3 mol%. The digital DNA–DNA hybridization and average nucleotide identity values between strain ASW11-100T and its closely related relatives were in ranges of 19.8–23.9% and 76.6–80.9 %, respectively. Cells of the isolate were Gram-negative, aerobic, non-flagellated and short rod-shaped. Carotenoid pigments were produced, but flexirubin-type pigments were absent. The major fatty acids (>10 %) were iso-C15 : 0, iso-C17 : 0 3-OH and summed feature 3 (C16 : 1 ω6c and/or C16 : 1 ω7c). The sole respiratory quinone was menaquinone-6 and the major polar lipid was phosphatidylethanolamine. Based on the above polyphasic evidence, strain ASW11-100T should be considered to represent a novel Gramella species, for which the name Gramella sediminis sp. nov. is proposed. The type strain is ASW11-100T (=KCTC 82502T=MCCC 1K05580T).

show abstract

Section: Physiology and Chemotaxonomysupporting

confidence: 73%

Section: Physiology and Chemotaxonomysupporting

confidence: 72%

Section: Introductionmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

See 2 more Smart Citations

Gramella sediminis sp. nov., isolated from a tidal flat of the Yellow Sea

Niu

Dong

Guan

et al. 2022

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

show abstract

“…nov. Park et al (2015a); data of columns 4-7 from Park et al (2015b). Fatty acids that represented <1.0 % in all columns were omitted.…”

Section: Salegentibacter Salegens Dsm 5424 T (M92279)mentioning

confidence: 99%

Gramella sediminilitoris sp. nov., isolated from a tidal flat

Park

Yoon

Jung

et al. 2016

International Journal of Systematic and Evolutionary Microbiology

Self Cite

View full text Add to dashboard Cite

A Gram-stain-negative, aerobic, non-spore-forming, motile by gliding and coccoid, ovoid or rodshaped bacterial strain, designated GHTF-27 T , was isolated from a tidal flat at Goheung, South Korea, and subjected to a taxonomic study using a polyphasic approach. The novel strain grew optimally at 30 C, at pH 7.0-8.0 and in the presence of 2.0-5.0 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences revealed that strain GHTF-27 T belongs to the genus Gramella. It exhibited 16S rRNA gene sequence similarity values of 97.6-98.3 % to the type strains of Gramella aestuariivivens, Gramella echinicola, Gramella gaetbulicola, Gramella aquimixticola, Gramella aestuarii and Gramella portivictoriae, respectively, and of 93.8-96.7 % to the type strains of the other species of the genus Gramellawith validly published names. Strain GHTF-27 T contained MK-6 as the predominant menaquinone and iso-C 15 : 0 and iso-C 17 : 0 3-OH as the major fatty acids. The major polar lipids of strain GHTF-27 T were phosphatidylethanolamine and one unidentified lipid. The DNA G+C content of strain GHTF-27 T was 39.7 mol% and DNA-DNA relatedness values with the type strains of the six phylogenetically closely related species of the genus Gramellawere 12-28 %. The differential phenotypic properties, together with its phylogenetic and genetic distinctiveness, revealed that strain GHTF-27 T is separated from other species of the genus Gramella. On the basis of the data presented, strain GHTF-27 T is considered to represent a novel species of the genus Gramella, for which the name Gramella sediminilitorissp. nov. is proposed. The type strain is

show abstract