A validation study of the computational protocol for predicting the optical properties of Monolayer‐Protected metal Clusters (MPCs) using time‐dependent density‐functional theory is presented. The Au25(SC2H4Ph)18− MPC is chosen as a reference, due to the availability of both structural and optical experimental data. The effects of the geometry, the basis set, the exchange‐correlation functionals, and the use of simplified or experimental ligands on the optical properties of Au25(SC2H4Ph)18− are discussed critically. When such options are carefully selected, an almost quantitative matching between theory and experiment is obtained. Noteworthy, the use of a precise geometric structure proves to be both crucial and critical for an accurate prediction of the optical response of MPC systems, a feature which is not easy to achieve using current density‐functional theory approaches.