The complete genome of a novel adult diarrhoea rotavirus strain J19 was cloned and sequenced using an improved single-primer sequence-independent method. The complete genome is 17 961 bp and is . Northern blot analysis and genomic sequence analysis indicated that segments 1-11 encode 11 viral proteins, respectively. Protein alignments with the corresponding proteins of J19 with B219, and groups A, B and C rotaviruses, produced higher per cent sequence identities to B219. Among groups A, B and C rotaviruses, 10 proteins from group B rotaviruses exhibited slightly higher amino acid sequence identity to the J19 proteins, but proteins of J19 showed low amino acid sequence identity with groups A and C rotaviruses. Construction of unrooted phylogenetic trees using a set of known proteins and representatives of three known rotavirus groups revealed that six structural proteins were positioned close to B219 and the basal nodes of groups A, B and C lineages, although with a preferred association with group B lineages. Phylogenetic analysis of the five non-structural proteins showed a similar trend. The results of the serological analysis, protein sequence analysis and phylogenetic analysis suggested that J19 would be a novel rotavirus strain with great significance to the evolution and origin of group B rotaviruses.
INTRODUCTIONRotaviruses are important aetiological agents of disease in humans and animals. The viral genome is composed of 11 segments of double-stranded (ds) RNA that encode structural and non-structural proteins. The group A rotavirus strain SA11 genome, sequenced in 1990, is AUrich and has 18 555 bp (Both et al., 1984;Estes et al., 1984;Mitchell & Both, 1990). Its RNA segments encode six structural proteins (VP1, VP2, VP3, VP4, VP6 and VP7) and five non-structural proteins (NSP1, NSP2, NSP3, NSP4 and NSP5) (Estes, 2001). VP6 is the group antigen determinant, making up approximately 50 % of the viral protein (Estes et al., 1984;Estes & Cohen, 1989). The antigenic properties of VP6 are used to define seven antigenically different rotavirus groups, named groups A-G. Groups A, B and C rotaviruses infect humans, while other groups have been found only in animal species (Saif & Jiang, 1994). Group A rotaviruses cause severe diarrhoea in infants and young children, but they can also infect adults. Group C rotavirus infection occurs both in children and in adults, usually in sporadic cases or clustered outbreaks (Rodger et al., 1982;Caul et al., 1990;Jiang et al.,1995; Kuzuya et al., 1996; Nilsson et al., 2000;Adah et al., 2002;Chen et al., 2002;Ji et al., 2002;Schnagl et al., 2004).In China, large waterborne epidemics caused by the human group B rotavirus strain adult diarrhoea rotavirus (ADRV) infected thousands of people aged between 10 and 40 years of age in the 1980s (Hung et al., 1983(Hung et al., , 1984Chen et al., 1985Chen et al., , 1990 et al., 1987). The same rotavirus was implicated in gastroenteritis outbreaks in Beijing city in 1994 and in Shijiazhuang city in 1997. Partial genes of NADRV were clon...