Aims Atlantic Rainforest biome is one of the most threatened in the world by deforestation where afforestation programs are urgently needed. N-fixing species should be prioritized in re-establishing forest covers as they can enhance soil C and N and stimulate cycling of other nutrients. Yet, tropical ecosystems play a key role in global warming and remain underestimated in the global biogeochemical balances. We aimed to investigate the effects of tropical N-fixing species on soil C and N pools after pasture conversionMethods We selected: Plathymenia reticulata, Hymenaea courbaril, and Centrolobium tomentosum 27-year-old monospecific stands. We evaluated soil organic carbon (SOC), nitrogen (STN), and the natural abundance of 13C and 15N in the soil profile up to 100 cm depth. Results SOC was higher for P. reticulata, but an opposite pattern was observed when combining only soil layers up to 30 cm soil depth. Meanwhile, STN was similar across species and d15N values showed enrichment at intermediate soil layers indicating 14N gaseous loss. Most of the SOC originated from the planted trees rather than the former pasture, except beneath C. tomentosum where C4 derived C is decreasing at a slower rate. Conclusion This study presents novel insights in the understanding of tropical N-fixing species effects on soil C and N where specific-species traits appear to mediate SOC retention to the mineral soil rather than the N-fixing ability per se.