2017
DOI: 10.1093/gigascience/giw013
|View full text |Cite
|
Sign up to set email alerts
|

GUIdock-VNC: using a graphical desktop sharing system to provide a browser-based interface for containerized software

Abstract: Background: Software container technology such as Docker can be used to package and distribute bioinformatics workflows consisting of multiple software implementations and dependencies. However, Docker is a command line–based tool, and many bioinformatics pipelines consist of components that require a graphical user interface. Results: We present a container tool called GUIdock-VNC that uses a graphical desktop sharing system to provide a browser-based interface for containerized software. GUIdock-VNC uses the… Show more

Help me understand this report

Search citation statements

Order By: Relevance

Paper Sections

Select...
1
1
1
1

Citation Types

0
9
0

Year Published

2017
2017
2022
2022

Publication Types

Select...
4
3

Relationship

5
2

Authors

Journals

citations
Cited by 11 publications
(9 citation statements)
references
References 13 publications
0
9
0
Order By: Relevance
“…Jupyter notebooks (Kluyver et al, 2016) can also be used to interactively execute, visualize, and document part of the pipeline while remaining within the Bwb sandbox. This functionality is achieved using methodologies derived from our GUIdock-X11 (Hung et al, 2016) and GUIdock-VNC (Mittal et al, 2017) to directly export graphics created by a module to the browser window.…”
Section: Reproducible Execution and Customization Of Workflows For Nomentioning
confidence: 99%
“…Jupyter notebooks (Kluyver et al, 2016) can also be used to interactively execute, visualize, and document part of the pipeline while remaining within the Bwb sandbox. This functionality is achieved using methodologies derived from our GUIdock-X11 (Hung et al, 2016) and GUIdock-VNC (Mittal et al, 2017) to directly export graphics created by a module to the browser window.…”
Section: Reproducible Execution and Customization Of Workflows For Nomentioning
confidence: 99%
“…The major technical challenge to porting desktop based image analyses applications to the cloud is to support the same graphical interface and display on the cloud that one would see on a laptop or desktop. Bwb supports two methodologies for accomplishing this using software containers [6, 7]. We combine both methods in Bwb to allow the user to export graphics from a container that functions both on a local laptop and on a remote cloud server.…”
Section: Resultsmentioning
confidence: 99%
“…This requires software on the client to process these commands and draw the screen. The other approach is to draw the screen and then export the resulting frames using a VNC protocol (Mittal et al, 2017). This also requires VNC viewer software on the client to manage the transfer and buffering of the frame data.…”
Section: Approachmentioning
confidence: 99%
“…A graphical interface is provided through the use of our GUIdock-VNC [24] technology. Bwb is itself a container which is accessed through a browser.…”
Section: Bwb Provides a Friendly Graphical Interfacementioning
confidence: 99%