Mutations at the APM1 and APM2 loci in the green alga Chlamydomonas reinhardtii confer resistance to phosphorothioamidate and dinitroaniline herbicides. Genetic interactions between apm1 and apm2 mutations suggest an interaction between the gene products. We identified the APM1 and APM2 genes using a map-based cloning strategy. Genomic DNA fragments containing only the DNJ1 gene encoding a type I Hsp40 protein rescue apm1 mutant phenotypes, conferring sensitivity to the herbicides and rescuing a temperature-sensitive growth defect. Lesions at five apm1 alleles include missense mutations and nucleotide insertions and deletions that result in altered proteins or very low levels of gene expression. The HSP70A gene, encoding a cytosolic Hsp70 protein known to interact with Hsp40 proteins, maps near the APM2 locus. Missense mutations found in three apm2 alleles predict altered Hsp70 proteins. Genomic fragments containing the HSP70A gene rescue apm2 mutant phenotypes. The results suggest that a client of the Hsp70-Hsp40 chaperone complex may function to increase microtubule dynamics in Chlamydomonas cells. Failure of the chaperone system to recognize or fold the client protein(s) results in increased microtubule stability and resistance to the microtubuledestabilizing effect of the herbicides. The lack of redundancy of genes encoding cytosolic Hsp70 and Hsp40 type I proteins in Chlamydomonas makes it a uniquely valuable system for genetic analysis of the function of the Hsp70 chaperone complex. P ROPER folding of cellular proteins is critical for their function, and the Hsp70/DNAK chaperones play a critical role in folding proteins. Hsp70-mediated folding plays a role in assembly of proteins after synthesis, in translocating proteins across membranes, in refolding proteins after denaturation, in degrading denatured proteins if they cannot be successfully refolded, and in assembly or disassembly of protein complexes such as clathrin coats (reviewed by Meimaridou et al. 2009;Kampinga and Craig 2010;Schlecht et al. 2011). Hsp70 proteins are highly conserved across all species, from bacteria to mammals (reviewed by Karlin and Brocchieri 1998). They are the central component of "Hsp70 machines," acting in concert with a great variety of other proteins, including the DNAJ/Hsp40 class of proteins.A widely accepted model for chaperone action suggests that denatured proteins are recognized by an Hsp40 protein that delivers the protein to Hsp70 for folding and stimulates Hsp70 ATPase activity. In the next step, specific nucleotide exchange factors (NEFs) act on Hsp70 to release the bound client proteins and allow them to renature to their native state. Different Hsp40 proteins are thought to recognize different "client" protein substrates. Mechanical flexibility of the substrate binding domain of Hsp70 allows it to accommodate a wide array of client proteins (Schlecht et al. 2011).Hsp40 proteins are defined by having a J domain, a highly conserved sequence of 70 amino acids, usually at their N terminus, that interacts ...