Orbital frequency
analyzer (OFA) is one of the electrostatic ion
trap mass analysers for FTMS, which offers ultrahigh mass resolution
and high ion charge capacity. In order to analyze multiply charged
proteins and other large biological particles by means of charge detection
mass spectrometry, a data processing algorithm was created to suit
the image charge signal of nonharmonic waveform nature. The algorithm
is capable of detecting collisions between ions and residual gas molecules,
to determine lifetime of ions, and to evaluate the charge and mass
values for ions having lifetime above a threshold. With the filtering
of the lifetime and charge value, the chemical noise from small molecules
and protein fragments can be eliminated in the reconstructed spectrum,
facilitating measurement of protein content at a very low concentration,
down to tens of nanomolars. The standard deviation of charge measurement
is between 1.1 to 1.8 e for ions with oscillation lifetimes from 1
to 0.4 s, and this in turn determines the CDMS spectrum mass peak
width. It has been found that the lower voltage setting of the OFA
results in a larger population of ions surviving for longer times
and thus produces narrower mass peak width. While OFA is able to run
multiplexed CDMS without ion motion interference, coexisting ions
of the same or very close m/z can
cause interference between their image charge signals, which increases
the error in charge determination.