White striping, wooden breast, and spaghetti muscle have become common myopathies in broilers worldwide. Several research reports have indicated that the origin of these lesions is metabolic disorders. These failures in normal metabolism can start very early in life, and suboptimal incubation conditions may trigger some of the key alterations on muscle metabolism. Incubation conditions affect the development of muscle and can be associated with the onset of myopathies. A series of experiments conducted with broilers, turkeys, and ducks are discussed to overview primary information showing the main changes in breast muscle histomorphology, metabolism, and physiology caused by suboptimal incubation conditions. These modifications may be associated with current myopathies. Those effects of incubation on myopathy occurrence and severity have also been confirmed at slaughter age. The impact of egg storage, temperature profiles, oxygen concentrations, and time of hatch have been evaluated. The effects have been observed in diverse species, genetic lines, and both genders. Histological and muscle evaluations have detected that myopathies could be induced by extended hypoxia and high temperatures, and those effects depend on the genetic line. Thus, these modifications in muscle metabolic responses may make hatchlings more susceptible to develop myopathies during grow out due to thermal stress, high-density diets, and fast growth rates.