For the electric hydrostatic pump unit (EPU), which is a crucial component in the electro hydraulic servo pump control system (EHSPCS), nonlinear flow modelling is a key challenge to achieve high performance operation, especially in position control. For the nonlinear flow of EPUs, simple linearization combined with compensation has become a popular control method recently. However, the control performance is constrained by the reliance on deviation correction. This paper proposes utilizing the Gauss Newton iterative method to investigate the nonlinear flow modeling in the EPU, aiming to obtain the mapping relationship between the load flow and operating parameters in the EPU, thereby directly improving the control performance. A nonlinear flow model is built by utilizing the Gauss Newton iterative method based on test data obtained from various operating conditions, and the mapping relationship is presented accordingly. Experimental studies show that compared to well-established methods, this model exhibits high accuracy and practicality in improving the control performance, particularly in position control of the EPU.