Morphological characters that identify and describe living organisms have been a major practical criterion used in plant and animal systematics since morphological data form the basis of virtually all systematic descriptions [1]. However, results of the combined molecular and morphological research techniques, give insight into speciation processes and are fundamental to species-level taxonomy. They are successfully used in phylogeny reconstruction, to examine the causes of variability, to construct natural classification systems, and to define taxonomic borders [2]. Genetic studies of species complexes, within which taxonomic borders based on morphology are usually blurred, often permit to assess the level of inter-species distinction and, on the other hand, their relationships [3,4].Phylogenetic and taxonomical relationships between Melica ciliata L. and M. transsilvanica Schur (Poaceae) have not been exhaustively explained and established [5][6][7]. M. ciliata was described by Linnaeus [8] as a species that occurs in rocky and infertile hills of Europe but the exact place of its collection is unknown. M. transsilvanica, distinguishes by very unequal glumes and pubescent lower leaf-sheaths, was described by Schur [9] from the vicinity of the Sibiu town in the Transylvanian Plateau in Romania. An intricate infraspecific variability and some morphological overlap between species makes them taxonomically problematic [5,6]. M. transsilvanica has for a long time been regarded either as a subspecies or as a variety of M. ciliata in many European floras [10][11][12][13][14][15]. However, Papp [16] pointed out that M. transsilvanica is a separate species distinguished from M. ciliata by several characters, including a dense inflorescence, flatter leaves and details of leaf-sheath pubescence.Melica ciliata L. is a sub-Mediterranean species whose main continuous geographical range covers the area from the Atlantic and Mediterranean region, Central Europe, to southern Ukraine and the Crimea (Fig. 1). It also occurs in the southern part of the Scandinavian Peninsula and in north Africa. Single scattered records have been reported from the Middle East [17]. M. transsilvanica Schur is a sub-Mediterraneancontinental, mostly steppe and steppe-forest species. Its main Abstract A good knowledge of species delimitation is crucial for the biodiversity protection and the conservation of wild species. We studied the efficiency of AFLP markers and morphological characters to assist species determination for Melica ciliata L. and M. transsilvanica Schur within European range of distribution, including isolated and range-limit populations of "M. ciliata" (i.e. M. cf. ciliata) from the Polish Sudetes, where it is regarded as critically endangered. AFLP markers were found to be more effective then morphological characters (more or less continuous) in distinguishing the both studied species. AMOVA revealed very low genetic diversity within populations and high differentiation among populations of M. ciliata and M. transsilvanica (F ST ...