2019
DOI: 10.3389/fmicb.2019.01936
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High Genetic Diversity and Species Complexity of Diaporthe Associated With Grapevine Dieback in China

Abstract: Grapevine trunk diseases have become one of the main threats to grape production worldwide, with Diaporthe species as an emerging group of pathogens in China. At present, relatively little is known about the taxonomy and genetic diversity of Chinese Diaporthe populations, including their relationships to other populations worldwide. Here, we conducted an extensive field survey in six provinces in China to identify and characterize Diaporthe s… Show more

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Cited by 85 publications
(79 citation statements)
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“…Sequence files were processed using the pattern analysis software package BioEdit Sequence Alignment Editor v.7.0.5.0 (Hall, 1999). To establish the identity of the strains at the species level, combined phylogenetic analyses of the three considered loci (ITS + tub + EF1-α) were conducted against those of different species sequences selected by extensive literature review (Udayanga et al, 2011(Udayanga et al, , 2014a(Udayanga et al, ,b, 2015Gomes et al, 2013;Lombard et al, 2014;Huang et al, 2015;Dissanayake et al, 2017a,b;Gao et al, 2017;Santos et al, 2017a,b;Fan et al, 2018;Guarnaccia et al, 2018;Yang et al, 2018;Long et al, 2019;Manawasinghe et al, 2019;Marin-Felix et al, 2019;Ozawa et al, 2019;Zhou and Hou, 2019;Hilário et al, 2020) and retrieved from the National Center for Biotechnology Information (NCBI) database ( Supplementary Table 1). Individual alignments were performed using the MUSCLE tool (Edgar, 2004) implemented in MegaX (Kumar et al, 2018).…”
Section: Molecular Data Analysismentioning
confidence: 99%
“…Sequence files were processed using the pattern analysis software package BioEdit Sequence Alignment Editor v.7.0.5.0 (Hall, 1999). To establish the identity of the strains at the species level, combined phylogenetic analyses of the three considered loci (ITS + tub + EF1-α) were conducted against those of different species sequences selected by extensive literature review (Udayanga et al, 2011(Udayanga et al, , 2014a(Udayanga et al, ,b, 2015Gomes et al, 2013;Lombard et al, 2014;Huang et al, 2015;Dissanayake et al, 2017a,b;Gao et al, 2017;Santos et al, 2017a,b;Fan et al, 2018;Guarnaccia et al, 2018;Yang et al, 2018;Long et al, 2019;Manawasinghe et al, 2019;Marin-Felix et al, 2019;Ozawa et al, 2019;Zhou and Hou, 2019;Hilário et al, 2020) and retrieved from the National Center for Biotechnology Information (NCBI) database ( Supplementary Table 1). Individual alignments were performed using the MUSCLE tool (Edgar, 2004) implemented in MegaX (Kumar et al, 2018).…”
Section: Molecular Data Analysismentioning
confidence: 99%
“…However, with the development of molecular methods, species identification based on multigene phylogeny together with morphological characters provided a more accurate identification ( Udayanga et al, 2011 ; Gao et al, 2017 ). In recent studies, ITS, tef1 , tub2 , cal , and partial histone ( HIS ) genes have been used for species delimitation in this genus ( Udayanga et al, 2014a ; Santos et al, 2017 ; Guarnaccia and Crous, 2018 ; Manawasinghe et al, 2019 ). Diaporthe species have a worldwide distribution and diverse host associations ( Udayanga et al, 2014b ).…”
Section: Introductionmentioning
confidence: 99%
“…Dissanayake et al [45] provided accounts for 171 accepted species with a backbone tree for the genus. Manawasinghe et al [46] contributed to the understanding of this genus by studying the high genetic diversity and species complexity of Diaporthe associated with grapevine dieback.…”
Section: Plant Pathogensmentioning
confidence: 99%