Salicylaldimine-modified mesoporous silica (Sal-MCM-3 and Sal-MCM-9) was prepared through a co-condensation method with different amounts of added salicylaldimine. With the coordination from the salicylaldimine, zinc ions were impregnated on Sal-MCM-3 and Sal-MCM-9. Then, Zn-Sal-MCM-3 and Zn-Sal-MCM-9 were calcined to obtain nano-zinc oxide loaded on mesoporous silica (ZnO-MCM-3 and ZnO-MCM-9). The material structures were systematically studied by Fourier transform infrared spectroscopy (FTIR), N2 adsorption/desorption measurements, X-ray powder diffraction (XRD), zeta potential, scanning electron microscopy (SEM), transmission electron microscopy (TEM), X-ray photoelectron spectroscopy (XPS), ultraviolet diffused reflectance spectrum (UV-vis DRS), and thermogravimetry (TGA). Methyl orange (MO) was used to investigate the photocatalysis behavior of ZnO-MCM-3 and ZnO-MCM-9. The results confirmed that nano ZnO was loaded in the channels as well as the outside surface of mesoporous silica (MCM-41). The modification of salicylaldimine helped MCM-41 to load more nano ZnO on MCM-41. When the modification amount of salicylaldimine was one-ninth and one-third of the mass of the silicon source, respectively, the load of nano ZnO on ZnO-MCM-9 and ZnO-MCM-3 had atomic concentrations of 1.27 and 2.03, respectively. ZnO loaded on ZnO-MCM-9 had a wurtzite structure, while ZnO loaded on ZnO-MCM-3 was not in the same crystalline group. The blocking effect caused by nano ZnO in the channels reduced the orderliness of MCM-41. The photodegradation of MO can be divided in two processes, which are mainly controlled by the surface areas of ZnO-MCM and the loading amount of nano ZnO, respectively. The pseudo-first-order model was more suitable for the photodegradation process.