<p><strong>Abstract.</strong> The assessment of diagenetic overprint on microstructural and geochemical data gained from fossil archives is of fundamental importance for understanding palaeoenvironments. A correct reconstruction of past environmental dynamics is only possible when pristine skeletons are unequivocally distinguished from altered skeletal elements. Our previous studies (Casella et al., 2017) have shown that replacement of biogenic carbonate by inorganic calcite occurs via an interface coupled dissolution&#8211;reprecipitation mechanism. Furthermore, for a comprehensive assessment of alteration, structural changes have to be assessed on the nanoscale as well, which documents the replacement of pristine nanoparticulate calcite by diagenetic nanorhombohedral calcite (Casella et al., 2018a, b).</p> <p>In the present contribution we investigated six different modern biogenic carbonate microstructures for their behaviour under hydrothermal alteration in order to assess their potential to withstand diagenetic overprint and to test the integrity of their preservation in the fossil record. For each microstructure (a) the evolution of biogenic aragonite and calcite replacement by inorganic calcite was examined, (b) distinct carbonate mineral formation steps on the micrometre scale were highlighted, (c) microstructural changes at different stages of alteration were explored, and (d) statistical analysis of differences in basic mineral unit dimensions in pristine and altered skeletons was performed. The latter analysis enables an unequivocal determination of the degree of diagenetic overprint and discloses information especially about low degrees of hydrothermal alteration.</p>