“…BAMS3 consists of four organic polymer pools (lignin, cellulose, hemicellulose, and peptidoglican), eight organic monomer pools (monosaccharide, fatty acids, organic acids, phenols, nucleotides, amino acids, amino sugars, and organic sulfur), two inorganic carbon species (CO 2 and CH 4 ), seven inorganic nitrogen species (NH 3 , NH , NO , NO , NO, N 2 O, and N 2 ), five inorganic sulfur species (SO , SO , S 2 O , S 0 , and HS − ), and 13 microbial functional groups including fungi ( F DEP ), heterotrophic bacteria ( B AER ), methanogenic bacteria ( B MGB ), methanotrophic oxidizing bacteria ( B MOB ), ammonia‐oxidizing bacteria ( B AOB ), nitrite‐oxidizing bacteria ( B NOB ), denitrifying bacteria ( B DEN ), anaerobic ammonia oxidation bacteria ( B ANMX ), sulfur reducing bacteria ( B SrRB ), thiosulfate‐ and sulfide‐reducing bacteria ( B ThSRB ), sulfate‐reducing bacteria ( B SRB ), thiosulfate‐ and sulfide‐disproportioning bacteria ( B SDB ), and photolithoautotroph‐oxidizing bacteria ( B SOB ). The C‐N coupled cycle is described in Tang et al () and includes depolymerization, mineralization, nitrification, denitrification, nitrogen fixation, and microbial immobilization, while detailed description of the C and N cycles can be found in Riley et al () and Maggi et al (). In addition to those processes, BAMS3 includes the anaerobic monosaccharide degradation mediated by methanogenic bacteria ( B MGB ) that results in CH 4 production (R13, in Figure ), CH 4 oxidation by methanotrophs ( B MOB ) (R14 in Figure ), and the ANAMMOX by anaerobic ammonnia oxidation bacteria ( B ANMX ) (R25 in Figure ), following reaction from Strous et al () as …”