This introduction to the special issue, Nonlinear dynamics in meso and nano scales: fundamental aspects and applications, gives a short overview about different contexts and current challenges posed by the emergence of nonlinearities at meso and nano characteristic sizes. It also addresses different aspects related to classical and quantum chaos. Moreover, it comments on the articles in this thematic publication, briefly summarizing their relevance in helping to understand the uprise of chaos and complex behaviour at those small scales.