b Label-free nonlinear spectral imaging microscopy (NLSM) records two-photon-excited fluorescence emission spectra of endogenous fluorophores within the specimen. Here, NLSM is introduced as a novel, minimally invasive method to analyze the metabolic state of fungal hyphae by monitoring the autofluorescence of NAD(P)H and flavin adenine dinucleotide (FAD). Moreover, the presence of melanin was analyzed by NLSM. NAD(P)H, FAD, and melanin were used as biomarkers for freshness of mushrooms of Agaricus bisporus (white button mushroom) that had been stored at 4°C for 0 to 17 days. During this period, the mushrooms did not show changes in morphology or color detectable by eye. In contrast, FAD/NAD(P)H and melanin/NAD(P)H ratios increased over time. For instance, these ratios increased from 0.92 to 2.02 and from 0.76 to 1.53, respectively, at the surface of mushroom caps that had been harvested by cutting the stem. These ratios were lower under the skin than at the surface of fresh mushrooms (0.78 versus 0.92 and 0.41 versus 0.76, respectively), indicative of higher metabolism and lower pigment formation within the fruiting body. Signals were different not only between tissues of the mushroom but also between neighboring hyphae. These data show that NLSM can be used to determine the freshness of mushrooms and to monitor the postharvest browning process at an early stage. Moreover, these data demonstrate the potential of NLSM to address a broad range of fundamental and applied microbiological processes. W orldwide, the annual production of edible mushrooms amounts to approximately 7.7 million tons. The white button mushroom, Agaricus bisporus, is one of the most important commercial species. It is low in fat and rich in fiber, vitamins, minerals, linoleic acid, and bioactive compounds such as anticancer polysaccharides (1-3). Moreover, the button mushroom contains more digestible proteins than most vegetables and only slightly less than meat products and milk (4, 5). Mushrooms are a perishable product. Therefore, there is a need for tools to monitor freshness of fruiting bodies. These tools could also be applied in breeding programs and to improve storage conditions.The metabolic state and melanin formation could be used as indicators for freshness of mushrooms. The presence of melanin can be detected by various microscopic techniques (6-8). There are also several methods to quantify the metabolic activity of fungi. They are often based on fluorescence assays monitoring the activity of NADH-dependent dehydrogenases (9) or NADH-dependent oxidoreductases (10, 11) or by viability stains that are metabolized in the presence of ATP and intracellular esterases (12). Most of these assays require cell extracts, tissue sectioning, and incorporation of marker molecules into cells. Nonlinear spectral microscopy (NLSM) is a potent, noninvasive (13-17) alternative to monitor the metabolic state and the presence of melanin in fungi. NLSM maps (auto)fluorescence emission spectra within the specimen (18)(19)(20). Phototoxicity of this ...