The coupling of various chemical microseparation methods with small-scale NMR detection is a growing area in analytical chemistry. The formation of enlarged flow cells within the active volume of the NMR detector can significantly increase the coil filling factor and hence the signal-to-noise ratio of the NMR spectra. However, flow cells can also lead to deterioration of the separation efficiency due to the development of complex flow patterns, the form of which depend on the particular geometry of the flow cell and the flow rate used. In this study, we investigated the flow characteristics in different flow cell geometries relevant to the coupling of capillary liquid chromatography and NMR. Computational fluid dynamics was used to simulate fluid flow inside flow cells with a volume of ~ 1 µL. Magnetic resonance microimaging was used to measure experimentally the velocity fields inside these flow cells. The results showed good agreement between experiment and simulation and demonstrated that a relatively gradual expansion and contraction is necessary to avoid areas of weak recirculation and strong radial velocities, both of which can potentially compromise separation efficiency.An essential component in the purification and analysis of unknown compounds is efficient separation of individual components from an often complex chemical or biological system. Advances in microseparations, include techniques such as capillary liquid chromatography (cLC), 1 capillary electrophoresis (CE), 2 and capillary electrochromatography 3 have played a large role in improving the separation efficiency. The chromatographic dilution (D) of cLC, for example, is given by (1) where C 0 is the initial concentration of the analyte, C max is the final compound concentration at the peak maximum, r is the column radius, ϵ is the column porosity, k is the retention factor, L is the column length, H is the column plate height, and V inj is the injected sample volume. Equation 1 shows that a smaller column radius results in less chromatographic dilution and higher concentration elution peaks. The smaller scale is also much more amenable to very rapid separations. In addition to these general benefits of microseparations, in electrophoretic separations the high surface area-to-volume ratio of the small capillaries used in CE systems,