BACKGROUND: During the pretreatment of lignocellulosic materials, molecules such as carboxylic acids, furan derivatives and phenolic compounds, which inhibit the growth and ethanol fermentation by bacteria, fungi and yeasts, are produced. The present work determines the tolerance levels of the C5, C6 fermenting fungus Fusarium oxysporum, towards individual model inhibitory compounds on aerobic growth, on lignocellulolytic activities and on fermentative performance.