Studies in Saccharomyces cerevisiae indicate the histone variant H2A.Z is deposited at promoters by the chromatin remodeling protein Swr1 and plays a critical role in the regulation of transcription. In higher eukaryotes, however, little is known about the distribution, method of deposition, and function of H2A.Z at promoters. Using biochemical studies, we demonstrated previously that SRCAP (SNF-2-related CREB-binding protein activator protein), the human ortholog of Swr1, could catalyze deposition of H2A.Z into nucleosomes. To address whether SRCAP directs H2A.Z deposition in vivo, promoters targeted by SRCAP were identified by a chromatin immunoprecipitation (ChIP)-on-chip assay. ChIP assays on a subset of these promoters confirmed the presence of SRCAP on inactive and active promoters. The highest levels of SRCAP were observed on the active SP-1, G3BP, and FAD synthetase promoters. Detailed analyses of these promoters indicate sites of SRCAP binding overlap or occur adjacent to the sites of H2A.Z deposition. Knockdown of SRCAP levels using siRNA resulted in loss of SRCAP at these promoters, decreased deposition of H2A.Z and acetylated H2A.Z, and a decrease in levels of SP-1, G3BP, and FAD synthetase mRNA. Thus, these studies provide the first evidence that SRCAP is recruited to promoters and is critical for the deposition of H2A.Z.Chromatin remodeling has emerged as a key mechanism for gene regulation in development and cancer. The histone variant H2A.Z is a universally conserved intrinsic component of eukaryotic chromatin (1). Studies in Saccharomyces cerevisiae indicate that H2A.Z is required for normal gene expression, is distributed throughout the genome, and appears to be required for proper recruitment of RNA polymerase II (RNAP II) 2 and TATA-binding protein (TBP) (2). The highest levels of H2A.Z in S. cerevisiae occur within nucleosomes located at inactive promoters where it has been postulated to provide the correct promoter architecture to facilitate activation of transcription (3-5). Activation of transcription results in decreased levels of H2A.Z and an increase in acetylated H2A.Z, which has been proposed to facilitate disassembly/reassembly of nucleosomes (6 -8).In higher eukaryotes, the genomic distribution and the biological function(s) of H2A.Z are poorly defined. In mammals, H2A.Z is essential for embryonic development and chromosome segregation, and increased H2A.Z expression is implicated in cardiac hypertrophy (9 -11). Studies done in chicken cells suggest that deposition of both H2A.Z and acetylated H2A.Z in higher eukaryotes differs from that observed in S. cerevisiae and occurs at active promoters but not at inactive promoters (12, 13). The specific role that H2A.Z plays at active promoters in higher eukaryotes has not been established.The exchange of H2A.Z into nucleosomes in S. cerevisiae has been demonstrated by genetic and biochemical approaches to be carried out by the catalytic subunit of the SWR-C complex, termed Swr1 (14, 15). A SRCAP complex, which is the human ortholog of the...