2013
DOI: 10.4238/2013.may.21.1
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Identification of expressed sequences in the coffee genome potentially associated with somatic embryogenesis

Abstract: ABSTRACT. Brazil possesses the most modern and productive coffee growing farms in the world, but technological development is desired to cope with the increasing world demand. One way to increase Brazilian coffee growing productivity is wide scale production of clones with superior genotypes, which can be obtained with in vitro propagation technique, or from tissue culture. These procedures can generate thousands of clones. However, the methodologies for in vitro cultivation are genotype-dependent, which leads… Show more

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Cited by 7 publications
(8 citation statements)
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“…Those tissues were collected under different physiological states as different stages of fruit development and flowering, young and mature leaves and under influence of biotic and abiotic stress ( Esteves Vieira et al, 2006 ). The large number of data generated by this consortium is extremely valuable to help to clarify molecular events like SE ( Silva et al, 2013 ). Recently the genome of C. canephora was published, opening new possibilities to explore and understand the coffee diversity ( Denoeud et al, 2014 ).…”
Section: The Potential Of Omics Technology and Molecular Markers To Imentioning
confidence: 99%
See 2 more Smart Citations
“…Those tissues were collected under different physiological states as different stages of fruit development and flowering, young and mature leaves and under influence of biotic and abiotic stress ( Esteves Vieira et al, 2006 ). The large number of data generated by this consortium is extremely valuable to help to clarify molecular events like SE ( Silva et al, 2013 ). Recently the genome of C. canephora was published, opening new possibilities to explore and understand the coffee diversity ( Denoeud et al, 2014 ).…”
Section: The Potential Of Omics Technology and Molecular Markers To Imentioning
confidence: 99%
“…Since these four genes are relatively well known in other species, especially in model organisms, their role and specifically presence or similarity in coffee are further discussed. Silva et al (2013) identified 15 EST-contigs related to the embryogenesis process in coffee. Among those 15 ESTs, 1 sequence was annotated to abiotic stress.…”
Section: The Potential Of Omics Technology and Molecular Markers To Imentioning
confidence: 99%
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“…The A. thaliana AtWUS gene maintains meristem in vegetative and floral buds and regulates floral patterning (1,33,34). WUS gene was shown to be involved in somatic embryo development in C. arabica, C. canephora and C. racemosa (35). Ectopic expression of WUS genes promoted somatic embryogenesis and organogenesis in A. thaliana (2), C. canephora (3) and Gossypium hirsutum (4).…”
Section: Gene Duplication Events and Spatio-temporal Expression Profilementioning
confidence: 99%
“…Specific tissue expression patterns for each ethylene response factors (ERF) gene family (Lima et al, 2011), as well as the identification of candidate genes potentially associated with somatic embryogenesis (Silva et al, 2013), have been reported by in silico analysis of C. arabica EST libraries. Here, we performed a similar analysis of the transcription patterns of C. arabica CYPs using EST libraries derived from different organs/tissues and growth conditions, providing an initial framework to study different aspects of CYP gene expression in Coffea.…”
Section: In Silico Expression Analysismentioning
confidence: 99%