Optimal sensor placement for timber architecture heritage poses a significant challenge due to the unique structural types and complex monitoring purposes. In this study, a three-stage method is proposed, taking a courtyard-style heritage, built 133 years ago, as an example. First, a finite element model that accounted for the parameter randomness and initial damage was constructed using a genetic algorithm (GA) and experimental results. Second, a new weighted fitness function of logarithmic type was developed for multi-type sensors and multi-objective monitoring. Third, a novel genetic algorithm, Meta-GA, was proposed, introducing competition group mechanisms and gene libraries to improve optimal capability while maintaining computational efficiency. The Meta-GA is then compared to the other two optimization modes using seven indexes. Finally, damage detection capability was tested for the proposed three schemes at noise levels of 0%, 5%, and 10%. The results reveal that the proposed three-stage method with Meta-GA can provide the best solution.