The release of hormones and neurotransmitters requires the fusion of cargo-containing vesicles with the plasma membrane. This process of exocytosis relies on three SNARE proteins, namely syntaxin and SNAP-25 on the target plasma membrane and synaptobrevin on the vesicular membrane. In this study we examined the molecular assembly pathway that leads to formation of the fusogenic SNARE complex. We now show that the plasma membrane syntaxin and SNAP-25 interact with high affinity and equimolar stoichiometry to form a stable dimer on the pathway to the ternary SNARE complex. In bovine chromaffin cells, syntaxin and SNAP-25 colocalize in defined clusters that average 700 nm in diameter and cover 10% of the plasma membrane. Removal of the C terminus of SNAP-25 by botulinum neurotoxin E, a known neuroparalytic agent, dissociates the target SNARE dimer in vitro and disrupts the SNARE clustering in vivo. Together, our data uncover formation of stable syntaxin/SNAP-25 dimers as a central principle of the SNARE assembly pathway underlying regulated exocytosis.Hormonal and neurotransmitter release occurs when vesicles fuse with the plasma membrane in a calcium-dependent manner. The three SNARE 1 proteins, namely synaptobrevin2 (also known as VAMP2) on the vesicular membrane and syntaxin1 and SNAP-25 on the target plasma membrane, are essential for the last step of vesicular exocytosis, the fusion of membranes (1, 2). These three proteins form a highly stable ternary complex that likely drives the fusion of the two apposing membranes (3). Botulinum toxins, which specifically cleave SNARE proteins prior to the formation of the ternary SNARE complex, block vesicle exocytosis in both neurons and endocrine cells (2, 4). The plasma membrane protein SNAP-25 is a molecular target for botulinum toxin E (5). This toxin removes the C-terminal 26 amino acids from the SNAP-25 molecule and has been used previously to dissect stages of calcium-triggered exocytosis (6, 7). Although these studies demonstrated that the ternary SNARE complex forms at a late stage of vesicle exocytosis, the molecular events preceding formation of this complex remain largely unknown.Several contradicting theories have been put forward with regard to the molecular pathway leading to SNARE complex assembly. One study suggested that SNAREs, although active, do not pre-assemble in resting cells into any intermediate complex but would form the ternary complex upon activation of exocytosis (8). It has also been proposed that SNAP-25 engages vesicular synaptobrevin in a priming step and that binding of syntaxin1 would be the pivotal event leading to membrane fusion (9). An alternative theory states that syntaxin1 and SNAP-25 pre-assemble into a stable heterodimer on the plasma membrane, and only then does vesicular synaptobrevin engage the two target SNAREs (10, 11). Importantly, it is not clear whether any SNARE intermediates actually exist in intact secretory cells as a prelude to SNARE-mediated fusion.To address these outstanding issues, we analyzed SNARE binary re...