A cluster of multicopper oxidase genes (mco1, mco2, mco3, mco4) from the lignin-degrading basidiomycete Phanerochaete chrysosporium is described. The four genes share the same transcriptional orientation within a 25 kb region. mco1, mco2 and mco3 are tightly grouped, with intergenic regions of 2?3 and 0?8 kb, respectively, whereas mco4 is located 11 kb upstream of mco1. All are transcriptionally active, as shown by RT-PCR. Comparison of cDNAs and the corresponding genomic sequences identified 14-19 introns within each gene. Based on homology and intron composition, two subfamilies of mco sequences could be identified. The sequences have copper-binding motifs similar to ferroxidase proteins, but different from fungal laccases. Thus, these sequences constitute a novel branch of the multicopper oxidase family. Analysis of several cDNA clones obtained from poly(A) RNA revealed the presence of transcripts of various lengths. Splice variants from mco2, mco3 and mco4 were characterized. They generally exhibited the presence of one to five introns, whereas other transcripts lacked some exons. In all cases, the presence of introns leads to frame shifts that give rise to premature stop codons. In aggregate, these investigations show that P. chrysosporium possesses a novel family of multicopper oxidases which also feature clustering and incomplete processing of some of their transcripts, a phenomenon referred to in this paper as 'altered splicing'.
INTRODUCTIONWhite rot fungi are the only organisms capable of efficiently degrading lignin to CO 2 and H 2 O. Among these, the basidiomycete Phanerochaete chrysosporium has been the most extensively characterized (Gold & Alic, 1993;Kirk & Cullen, 1998). The oxidative enzymes secreted by this fungus are also capable of degrading a wide variety of recalcitrant compounds, both natural and anthropogenic (Kirk & Farrell, 1987). When growing on wood, P. chrysosporium is highly aggressive towards lignin. This property, together with its ability to grow at rather elevated temperatures (about 40 u C) in compost, makes it a suitable micro-organism for biotechnological applications, such as biopulping and soil bioremediation. Its genome has been sequenced (Martinez et al., 2004) and is available at an interactive website (http://genome.jgi-psf.org/whiterot1/ whiterot1.home.html).Three different types of extracellular peroxidases have been described as being actively involved in lignin degradation by white rot fungi. These are manganese peroxidases (MnPs), lignin peroxidases (LiPs) and hybrid peroxidases which share properties of both MnPs and LiPs. For a recent review, see Martinez (2002). The genome of P. chrysosporium contains five and ten genes encoding MnP and LiP, respectively (Cullen, 1997;Martinez et al., 2004).Laccase is another type of extracellular enzyme that has been implicated in lignin degradation. Laccases catalyse the one-electron oxidation of phenols, aromatic amines and other electron-rich substrates, with the concomitant fourelectron reduction of O 2 to 2H 2 O. This vers...