Low pressure gas percolation characteristic in ultra-low permeability porous media is investigated in this article through core flow experiments. The results show that the wall-slip layer covers more than 10% of the average porous channel radius on account of minimum pore size when the permeability is below 0.1×10 −3 μm 2 order, and seepage behavior is contrasted to that in mid-high permeability pore media. When the gas pressure is not high enough, the flow regime turns into transitional flow instead of slip flow, and nonlinear relationship between the measured gas permeability and the reciprocal of average pressure exists. The gas measuring permeability experiment would be influenced by the nonlinear relationship. If Klinkenberg-corrected method is applied to speculate the equivalent liquid permeability, the extrapolated value will become less or minus. Simultaneously, actual gas flow velocity at the outlet is beyond the calculated value with Klinkenberg formula. A new gas seepage model based on the general slip boundary condition is derived from the homogenization technique in this article. At last the flow model is examined to be suitable for representing the gas flow behavior in ultra-low permeability media and estimating the absolute permeability from single-point, steady-states measurements.Keywords Slippage effect · Ultra-low permeability porous media · Knudsen number · Gas flow regime · Absolute permeability · Homogenization technique Fund project: National science and technology key special project "Development of large oil and gas fields and coal bed gas" (2008ZX05009).