ABSTRACT. The relationship between the invasion of indigenous bacteria into intestinal crypts and the proliferation of epithelial cells was histoplanimetrically investigated in the rat ascending colon. Indigenous bacteria preferentially adhered to the intestinal superficial epithelial cells in the mesenterium-attached mucosa (MAM) compared to those in the mesenterium-non-attached mucosa (MNM). Intestinal crypts with indigenous bacteria were also significantly more frequently found in MAM than in MNM. Total epithelial cells, columnar epithelial cells and goblet cells were significantly more abundant in the intestinal crypts with no-indigenous bacteria in MAM (MAM-C) than those in MNM (MNM-C), whereas the columnar epithelial cells were less abundant in MAM-C than in the intestinal crypts with indigenous bacteria in MAM (MAM-C-B). Columnar epithelial cells and goblet cells immuno-positive for proliferating cell nuclear antigen (PCNA) in MAM-C were more abundant than those in MNM-C, but less abundant than those in MAM-C-B. Toll-like receptor (TLR)-2, -4 and -9 were immuno-positive in the striated borders of the intestinal superficial epithelial cells, but their positive intensities were weaker in MAM than in MNM. From these findings, indigenous bacteria were confirmed to preferentially settle on the intestinal superficial epithelium of MAM in the rat ascending colon, and low TLRs-expression might contribute to the preferential settlement of indigenous bacteria in MAM. The increase of proliferating epithelial cells is probably induced by the invasion of indigenous bacteria into the intestinal crypts of MAM. KEY WORDS: ascending colon, epithelial proliferation, indigenous bacteria, rat, Toll-like receptor.doi: 10.1292/jvms.13-0036; J. Vet. Med. Sci. 75(7): [939][940][941][942][943][944][945][946][947] 2013 A large number of indigenous bacteria settle in the animal alimentary tract. The bacterial settlement initiates immediately after birth by bacteria derived from mother, and the number and composition of indigenous bacteria are stable in the adult alimentary tract [4]. The number of indigenous bacteria in the chyme increases toward the caudal alimentary tract, that is, 0-10 5 colony forming unit (CFU)/ml in the stomach to jejunum, 10 3 -10 9 CFU/ml in the ileum and 10 10 -10 12 CFU/ml in the colon of human [28], resulting in total 2 kg of indigenous bacteria in the human alimentary tract [11]. From histoplanimetrical investigation along the longitudinal axis of the rat intestine, indigenous bacteria settle on the intestinal superficial epithelium, whose apical surface expresses special sugars throughout the large intestine, and indigenous bacteria also reside in the intestinal crypts in the cecum and proximal 30% of the colon [34,35]. Additionally, numerous indigenous bacteria exist between the mucosal folds in the rat ascending colon [27]. However, the detailed distribution of the settlement sites of indigenous bacteria has not been investigated in the ascending colon.The settlement of indigenous or exogenous bac...