The quantitative relationship between Mesoscale Convective Systems (MCSs) and floods over East Asia has not been established. In this study, MCSs are clustered into four types with Self‐Organizing Map approach. Floods in June‐August of 2000–2021 are linked with different types of MCS by automated algorithms we constructed. We find that among the major floods (potential flood peak periods), 91% (87%) are related to MCS, 65% (78%) are dominated by MCS, and 38% (20%) are dominated by multi‐types of MCS. Types 1 and 2 MCS have higher flood‐inducing efficiencies than common MCS (Type‐4). Type‐1 MCS, characterized by the least number (2% of the total number), the largest precipitation volume, longest lifetime, slowest moving, strongest precipitation, can most efficiently produce floods. Type‐2 MCS, characterized by the second largest precipitation volume, more numerous than Type‐1 particularly over land, can induce floods not only relatively efficiently but also more frequently than Type‐1.