Renal endothelial cells (ECs) play crucial roles in vasorelaxation, ultrafiltration, and selective transport of electrolytes and water, but also in leakage of the glomerular filtration barrier and inflammatory processes like complement activation and leukocyte recruitment. In addition, they are target cells for both cellular and antibody mediated rejection in the transplanted kidney. In order to study the molecular and cellular processes underlying EC behavior in renal disease, well characterized primary renal ECs are indispensible. In this report we describe a straightforward procedure to isolate ECs from the perfusion fluid of human donor kidneys by a combination of negative selection of monocytes/macrophages, positive selection by CD31 Dynabeads and propagation in endothelial specific culture medium. Thus, we isolated and propagated renal ECs from 102 donor kidneys, representative of all blood groups and major HLA class I and II antigens. Obtained ECs were positive for CD31 and von Willebrand Factor, expressed other endothelial markers such as CD34, VEGFR-2, TIE2, and PV-1 to a variable extent, and were negative for monocyte marker CD14 and lymphatic endothelial marker podoplanin. HLA class II was either constitutively expressed or could be induced by IFN-γ. Furthermore, we showed the diagnostic value of this renal endothelial biobank in renal endothelial specific cross matching tests for HLA antibodies.