Two-component systems represent the most widely used signaling paradigm in living organisms. Encoding the prototypical twocomponent system in Gram-positive bacteria, the staphylococcal agr (accessory gene regulator) operon uses a polytopic receptor, AgrC, activated by an autoinducing peptide (AIP), to coordinate quorum sensing with the global synthesis of virulence factors. The agr locus has undergone evolutionary divergence, resulting in the formation of several distinct inter-and intraspecies specificity groups, such that most cross-group AIP-receptor interactions are mutually inhibitory. We have exploited this natural diversity by constructing and analyzing AgrC chimeras generated by exchange of intradomain segments between receptors of different agr groups. Functional chimeras fell into three general classes: receptors with broadened specificity, receptors with tightened specificity, and receptors that lack activation specificity. Testing of these chimeric receptors against a battery of AIP analogs localized the primary ligand recognition site to the receptor distal subdomain and revealed that the AIPs bind primarily to a putative hydrophobic pocket in the receptor. This binding is mediated by a highly conserved hydrophobic patch on the AIPs and is an absolute requirement for interactions in self-activation and cross-inhibition of the receptors. It is suggested that this recognition scheme provides the fundamental basis for agr activation and interference.staphylococci ͉ agr ͉ intradomain chimera ͉ autoinducing peptide T wo-component signaling systems function in the sensing of the cell's external environment and are probably the most widely used signaling paradigm in living organisms (1). Many twocomponent signaling systems in Gram-positive bacteria use polytopic transmembrane receptors that are activated by autoinducing peptides (AIPs) (2, 3). Although these systems regulate virulence in staphylococci (agr) (4) and enterococci ( fsr) (5), competence in bacilli (6) and pneumococci (com) (7), and bacteriocin production in lactic acid bacteria (pin and ssp) (8, 9), constituting a major component of the regulatory biology of these organisms, the mechanism(s) by which peptides bind to and activate the respective receptors are unknown.We have found the staphylococcal agr (accessory gene regulator) system to be particularly amenable to mechanistic investigation in this context for two reasons: first, because it is conserved throughout the staphylococci but has undergone a highly significant evolutionary divergence, resulting in four (or more) different specificity variants in Staphylococcus aureus and at least 20 others in the non-aureus species (10-12); and second, because the 7-to 10-aa AIPs of different staphylococcal species form a close family with a conserved structure consisting of a 5-aa thiolactone ring (a lactone ring in one case) and a linear 2-to 5-aa ''tail'' (13-16). Because the AIP from any one specificity group generally inhibits agr activation in the other groups (10,11,15,17,18), one is provided...