Chromatography on DEAE cellulose equilibrated with Pipes buffer resolved three forms of chorismate mutase (CM) from tubers and leaves of Solanum tuberosum: CM-IA and CM-1B were activated by tryptophan and inhibited by phenylalanine and tyrosine; CM-2 was unaffected by these aromatic amino acids. When compared to freshly excised discs, 3 day old tuber discs demonstrated a 4.5-fold increase in CM-1 activity following wounding. By contrast, CM-2 activity levels were not affected by this treatment. In aged tuber discs the CM-1:CM-2 activity ratio was 9:1. However, in green leaves the CM-1:CM-2 activity ratio was 1:4 suggesting organ specific regulation for the expression of these isozymes. The CM-I isozymes isolated from both tubers and leaves shared similar native molecular weight values of 55,000, Km values of 40 to 56 micromolar, and inhibition by phenylalanine (110-145 micromolar concentrations required for 50% inhibition) and tyrosine (50-70 micromolar concentrations required for 50% inhibition). The resolution of CM-1 into two forms occurred only in the presence of Pipes buffer. When this buffer was replaced with Aces, Bes, imidazole or Tris, only a single peak of CM-1 activity was observed. In these buffers CM-2 eluted as a shoulder on the CM-1 peak. Analytical isoelectric focusing of the CM-1 fraction followed by assay of the gel yielded only one form of CM-1 with an isoelectric point of 5.0. Gel filtration studies with Pipes buffer yielded molecular weights of 60,000 for both CM-1A and CM-lB indicating these forms are not the result of aggregation. The two forms of CM-1 may be artifacts generated by Pipes buffer.Chorismate mutase (EC 5.4.99.5) isozymes have been well resolved by chromatography on DEAE cellulose in a number of plants (5,6,14,15). Isozyme CM2-I has been shown to be activated by tryptophan and inhibited by phenylalanine and tyrosine, whereas CM-2 is not regulated by these aromatic amino acids. However, in other studies, only CM-1 activity could be detected following anion exchange chromatography (9, 15). In a previous investigation we detected only CM-1 activity in tubers of Solanum tuberosum following DEAE cellulose chromatography in citrate-phosphate buffer (9). Recent studies with parsley cell cultures (KF McCue, EE Conn, unpublished data) indicated that CM-1 and CM-2 may coelute on DEAE cellulose. This suggested that a similar phenom- enon might be occurring in the potato system. Utilizing DEAE cellulose equilibrated with Pipes buffer, Morris et al. (12) have recently detected CM-2 in potato tubers. We also report the resolution of CM-1 and CM-2 isozymes from tubers and green leaves of S. tuberosum. The data presented in this study revealed that ofthe five buffers employed, complete resolution of tuber CM isozymes on DEAE cellulose occurred only with Pipes buffer.The separation of CM-I and CM-2 by chromatography on DEAE cellulose allowed us to observe the effects of wounding and organogenesis on the expression of these shikimate pathway enzymes. Similar studies have been reported f...