1. Ariake Bay, which is located in western Japan, has a large tidal range (>6 m) and a vast tidal flat (200 km 2 ). In the early 1990s, the government-managed Isahaya Reclamation Project began in the western part of Ariake Bay. A 16-km 2 area of tidal flat in the inner part of Isahaya Bay was destroyed through reclamation and separated from the sea by a dyke, which created land and a freshwater reservoir.2. Since the initiation of the project, fishery yields around Isahaya Bay have dramatically decreased. The objective of this study was to clarify the relationship between the work associated with the Isahaya Reclamation Project and the recent environmental deterioration in Ariake Bay, with references to present sediment thickness and organic matter content, and hypoxic water distributions in Isahaya Bay.3. The organic matter load from the reservoir has increased since the initiation of the reclamation project and has been associated with a thick layer of fine sediment at the bottom of Isahaya Bay. The thickness of fine sediment and the total organic carbon content were higher in Isahaya Bay than in the freshwater reservoir.4. Based on measurements in August 2001, hypoxic water spread widely in and around Isahaya Bay; the lowest dissolved oxygen (DO) concentration (0.53 mg L
À1) was observed just outside the dyke. An analysis based on a two-layered box model using data obtained in August 2001 showed that the DO consumption rate in the bottom layer was high (0.61 mg O 2 L À1 day À1 ), and that 22-41% of the total organic carbon load needed to induce the hypoxic water was derived from the reclamation area.5. Our findings strongly suggest that enclosed seas may suffer from eutrophic and hypoxic conditions because of their low seawater-exchange rate. A comprehensive conservation programme and environmental assessment including physical and material transport processes in the system is needed to manage the environment of the enclosed sea.