Ovarian carcinoma in Lynch syndrome (LS) is associated with unexpectedly high survival; yet, beyond DNA mismatch repair (MMR) defects, the developmental mechanisms are unknown. We used established (genetic) and new (epigenetic) classifiers of ovarian cancer to explore similarities and differences between LS-associated and sporadic diseases. To this end, all available ovarian carcinomas (n 5 20) from MMR gene mutation carriers ascertained through a nation-wide registry and 87 sporadic ovarian carcinomas of the main histological types were molecularly profiled. LS-ovarian carcinomas were mostly of nonserous histology (12 endometrioid, seven clear cell and one serous), diagnosed at a mean age of 45.7 years, and associated with a 10-year survival of 87%. Among LS-ovarian carcinomas, 19/20 (95%) were MMR-deficient vs. 11/87 (13%) among sporadic cases (p < 0.0001). In a striking contrast to the sporadic cases, the expression of p53 was normal and KRAS/BRAF mutations absent in all LS-ovarian carcinomas. PIK3CA mutations, suggested to be a favorable prognostic factor, occurred with a frequency of 6/20 (30%), which was comparable to sporadic tumors of endometrioid or clear cell type. Tumor suppressor genes were more frequently methylated and LINE-1 hypomethylation less common in LS-ovarian carcinomas compared to their sporadic counterparts. The patterns of genetic and epigenetic alterations reflected the origin as LS vs. sporadic cases on one hand and the histological type on the other hand. In conclusion, the significant molecular differences observed between LS-associated and sporadic ovarian carcinomas help explain the different behavior of these tumors and emphasize the need for tailored clinical management.Ovarian carcinoma is the sixth most common cancer in females worldwide 1 and the fifth most common cause of cancer deaths in women. 2 The poor survival to incidence ratio in part reflects the fact that the majority of cases with epithelial ovarian cancer are diagnosed at an advanced stage. 3 Although the 5-year survival rate of women with localized disease is over 90%, it is only 30% in those with advanced disease. 3 A better understanding of the underlying molecular pathology would be vital to improve survival in ovarian cancer.Based on tumor grade and histology, epithelial ovarian cancers are divided into type I and type II tumors and the categories correlate with clinical and molecular features. 3,4 Type I tumors include the main nonserous histologies (endometrioid, clear cell and mucinous) as well as low-grade serous carcinoma. These tumors are slow growing and show frequent mutations in KRAS/BRAF, PTEN and Wnt signaling pathway genes, as well as occasional microsatellite instability (MSI). 3,4 Additionally, phosphatidylinositol 3-kinase (PI3K)/AKT pathway activation by PIK3CA mutation or amplification is common in clear cell ovarian carcinoma in particular. 3 Type II tumors primarily consist of high-grade serous carcinomas, grow rapidly and have frequent mutations or altered expression of TP53, as well as chr...