Background: Overexpression of Aurora-A (AURKA) is a feature of breast cancer and associates with adverse prognosis. The selective Aurora-A inhibitor alisertib (MLN8237) has recently demonstrated promising antitumor responses as a single agent in various cancer types but its phase III clinical trial was reported as a failure since MLN8237 did not show an apparent effect in prolonging the survival of patients. Thus, identification of potential targets that could enhance the activity of MLN8237 would provide a rationale for drug combination to achieve better therapeutic outcome. Methods: Here, we conducted a systematic synthetic lethality CRISPR/Cas9 screening of 507 kinases using MLN8237 in breast cancer cells and identified a number of targetable kinases that displayed synthetic lethality interactions with MLN8237. Then, we performed competitive growth assays, colony formation assays, cell viability assays, apoptosis assays, and xenograft murine model to Abbreviations: AURKA/Aurora-A, aurora kinase A; AURKB/Aurora-B, aurora kinase B; BUB1B, BUB1 mitotic checkpoint serine/threonine kinase B; CHEK1, checkpoint kinase 1; CPC, chromosomal passenger complex; CRISPR, clustered regularly interspaced short palindromic repeats; CSNK1A1, casein kinase 1 alpha 1; GSG2, germ cell-specific gene 2; DAPI, 4′,6-diamidino-2-phenylindole; DDR1, discoidin domain receptor tyrosine kinase 1; EGFP, enhanced green fluorescent protein; EGFP-sgCtrl, cells labeled with EGFP and introduced with a non-targeting sgRNA; ExMD, extends mitotic duration; K-fibers, kinetochore fibers; KMN network, kinetochore null protein 1 (KNL1)-missegregation 12 (MIS12) complex-nuclear division cycle 80 (NDC80) complex; KT, kinetochore; KT-MT, kinetochore-microtubule attachment; MAGeCK, model-based analysis of genome-wide CRISPR/Cas9 knockout; MCAK, mitotic centromere-associated kinesin; mCherry-sgCtrl, cells labeled with mCherry and introduced with a non-targeting sgRNA; mCherry-sgGSG2, cells labeled with mCherry and introduced with a sgRNA targeting GSG2; MINK1, misshapen like kinase 1; MOI, multiplicity of infection; MT, microtubule; NEK1, NIMA related kinase 1; NGS, next-generation sequencing; PCA, principal component analysis; PCM, pericentriolar material; pH3T3, phosphorylated threonine 3 of histone H3; QC, quality control; RB1, retinoblastoma; sgRNAs, single guide RNAs; TCGA, The Cancer Genome Atlas This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.