The present study highlights distinctions between the wild and captivity environments during the spawning season by providing light on the expression patterns of crucial genes in the BPG axis of female Mugil cephalus. Genes from the brain and ovaries (Kiss2, Gpr54, Gnrh1, and Drd2), as well as the pituitary and ovary (Lhβ, Fshβ, and Slα) were examined. According to the research, ripe females have higher relative expressions of all the genes analyzed in all the organs (brain, pituitary, and ovary) than do immature females. While Drd2 expression in captive females' brains and ovaries was higher than in wild females, the other genes under investigation that were evaluated in the brain, pituitary, or ovary showed higher expression values in mature wild females than in captive ones. A correlation between gene expression patterns in the studied organs of the wild females was recorded either directly or inversely, with their counterparts in captive ones. Results showed significant variance (p < 0.05) between captive and wild females. Overall, the noted connections and noteworthy variations in gene expression suggest possible effects of confinement on the reproductive physiology of these fish, with a particular emphasis on various hormones for experimental treatments for the captive females for artificial fertilization.