In Japan, 700–800 food products are recalled each year. Food product recalls affect consumer health as well as businesses, depending on the content and scale of the recalls. Approximately 10% of food loss from food manufacturers was generated in 2018 and 2019. In Japan, food product recalls and measures to prevent them have not been sufficiently studied. Therefore, to investigate this issue, about 2300 recalls instigated by regulatory bodies in Japan from 2018 to 2020 were classified based on product category, responsibility, reason for recall, and violation of laws and regulations, and the trends were analyzed. Recalls were primarily associated with violation of the Food Sanitation Law and Food Labeling Act, due to contamination by microorganisms or foreign materials, mis- or non-declaration of expiration or best-before date, and mis- or non-labeling of allergens. Therefore, better management by adopting the Hazard Analysis and Critical Control Point and food safety management systems as preventive measures and the design review of ISO 9001: 2018 may be effective in reducing recalls. Moreover, better communication between manufacturing and importing countries to ensure compliance with laws on safety limits of ingredients and label preparation may reduce the number of recalls.