Accumulating evidence demonstrates that there is a causative link between hsa‐micro
RNA
‐9‐5p (miR‐9) and pathophysiological processes. Enterovirus 71 (
EV
71) has been found to contribute to numerous severe clinical symptoms which result in death. The exact mechanism by which
EV
71 influences miR‐9 expression is unknown, and the relationship between miR‐9 and
EV
71 is still unclear. Here, miR‐9 expression was found to be impaired upon
EV
71 infection in several cell lines and in an
EV
71 infection mouse model. Additionally, we confirmed that
EV
71 infection induces robust expression of pro‐inflammatory cytokines (
TNF
‐α,
IL
‐6, and
IL
‐1) and interferons (
IFN
‐α and
IFN
‐β). Overexpression of miR‐9 attenuated
EV
71 proliferation and reduced protein and gene expressions of virion protein 1 (
VP
1) of
EV
71. Furthermore, we observed that the inflammation caused by
EV
71 infection was restored to a moderate level via miR‐9 overexpression. Nuclear factor kappa B (
NF
κB) in the retinoic acid‐induced gene 1 (
RIG
‐I) signaling pathway, but not interferon regulating factor 3 (
IRF
3), was significantly decreased and inactivated by ectopic miR‐9 expression. Moreover, in mouse infection experiments, administration of miR‐9 agomirs caused a significant decrease in
VP
1 levels and pro‐inflammatory cytokine production after viral inoculation. Taken together, the present data demonstrate that miR‐9 exerts an anti‐
EV
71 effect in cells and a mouse model via mediating
NF
κB activity of the
RIG
‐I signal pathway, thereby suggesting a new candidate for antiviral drug development.