Eleven compounds released from germinating seeds of a black-seeded bean (Phaseolus vulgaris L., cv Pl165426CS) induce transcription of nod genes in Rhizobium leguminosarum biovar phaseoli. Aglycones from 10 of those compounds were identified by spectroscopic methods (ultraviolet/visible, proton nuclear magnetic resonance, and mass spectroscopy), and their biological activities were demonstrated by induction of 8-galactosidase activity in R. leguminosarum strains containing nodA-lacZ or nodClacZ fusions controlled by R. leguminosarum biovar phaseoli nodD genes. By making comparisons with authentic standards, the chemical structures for aglycones from the 10 molecules were confirmed as being anthocyanidins (delphinidin, petunidin, and malvidin) and flavonols (myricetin, quercetin, and kaempferol). All anthocyanidins and flavonols had 3-0-glycosylation and free hydroxyl groups at the 4', 5, and 7 positions. Hydrolysis experiments showed that the mean concentration required for halfmaximum nod gene induction (lso) by the 10 glycosides was about half that of the corresponding aglycones. The mean 15o value for the three anthocyanidins (360 nanomolar) was less (P < 0.05) than that of the three flavonol aglycones (980 nanomolar). Each seed released approximately 2500 nanomoles of anthocyanidin and 450 nanomoles of flavonol nod gene inducers in conjugated forms during the first 6 hours of imbibition. Based on amounts and activities of the compounds released, anthocyanins contributed approximately 10-fold more total nod-inducing activity than flavonol glycosides. These anthocyanidins from bean seeds represent the first nod-inducing compounds identified from that group of flavonoids.Root nodule formation in legumes requires expression of nod genes in Rhizobium and Bradyrhizobium bacteria (reviewed in ref. 22). Transcription of nodABC is induced through the cooperative action of the protein product of the nodD gene and components of root and seed exudates. Particular flavonoids have been identified as natural nod-inducing factors for leguminous hosts of R. meliloti (13,26,29) japonicum (18, 33), R. leguminosarum bv3 viceae (8, 31, 40), R. leguminosarum bv trifolii (32), and the broad-host-range Rhizobium NGR234 (2). Some commercially available flavonoids induce nod genes in R. leguminosarum bv phaseoli (4), but no naturally occurring nod inducers have been reported from common bean.A detailed description of natural nod gene inducers released by alfalfa (Medicago sativa L.) is available (13,26,29). To assess whether the pattern of flavonoid release is unique to that species, a comparative study of nod gene inducers in another legume is needed. In this regard, an analysis of flavonoids released by common bean (Phaseolus vulgaris L.) is interesting for several reasons. First, like alfalfa, it is nodulated by a Rhizobium with a complex family of regulatory nodD genes that includes three alleles (4). Second, major differences in life history and site of origin between perennial alfalfa and annual bean may maximize the po...