Seventy bacterial isolates from the rhizosphere of tomato were screened for antagonistic activity against the tomato foot and root rot-causing fungal pathogen Fusarium oxysporum f. sp. radicis-lycopersici. One isolate, strain PCL1391, appeared to be an efficient colonizer of tomato roots and an excellent biocontrol strain in an F. oxysporum/tomato test system. Strain PCL1391 was identified as Pseudomonas chlororaphis and further characterization showed that it produces a broad spectrum of antifungal factors (AFFs), including a hydrophobic compound, hydrogen cyanide, chitinase(s), and protease(s). Through mass spectrometry and nuclear magnetic resonance, the hydrophobic compound was identified as phenazine-1-carboxamide (PCN). We have studied the production and action of this AFF both in vitro and in vivo. Using a PCL1391 transposon mutant, with a lux reporter gene inserted in the phenazine biosynthetic operon (phz), we showed that this phenazine biosynthetic mutant was substantially decreased in both in vitro antifungal activity and biocontrol activity. Moreover, with the same mutant it was shown that the phz biosynthetic operon is expressed in the tomato rhizosphere. Comparison of the biocontrol activity of the PCN-producing strain PCL1391 with those of phenazine-1-carboxylic acid (PCA)-producing strains P. fluorescens 2-79 and P. aureofaciens 30-84 showed that the PCN-producing strain is able to suppress disease in the tomato/F. oxysporum system, whereas the PCA-producing strains are not. Comparison of in vitro antifungal activity of PCN and PCA showed that the antifungal activity of PCN was at least 10 times higher at neutral pH, suggesting that this may contribute to the superior biocontrol performance of strain PCL1391 in the tomato/F. oxysporum system.

small bacteriocin was isolated from the culture broth of the gram-negative bacterium Rhizobium leguminosarum, which forms symbiotic nitrogen-fixing root nodules on a number of leguminous plants. The structure of the molecule was elucidated by spectroscopic methods and identified as N-(3R-hydroxy-7-cis-tetradecanoyl)-L-homoserine lactone. The absolute configuration of both asymmetric carbon atoms in the molecule was determined by the use of the chiral solvating agents S-(؉)-and R-(؊)-2,2,2-trifluoro-1-(9-anthryl)-ethanol. small bacteriocin is structurally related to the quorum sensing co-transcription factors for genes from other bacteria such as Vibrio fischeri, Pseudomonas aeruginosa, Erwinia carotovora, and Agrobacterium tumefaciens which are involved in animal-microbe or plant-microbe interactions. The mechanism of regulation of such interactions by this kind of co-transcription factors is still unknown in R. leguminosarum.small bacteriocin (small) is produced by strains of all three biovars of Rhizobium leguminosarum and inhibits the growth of R. leguminosarum bv. viciae 248 and several other strains of this species which, like strain 248, contain a self-transmissible plasmid (12,17). Two genes located close to the transfer (tra) genes (17) on the Sym plasmid pRL1JI of strain 248 are responsible for the fact that this strain does not produce small (rps [repression production small] gene) and that it is sensitive to small (sbs [small bacteriocin sensitivity] gene) (12,17). When strain 248 is cured of its Sym plasmid, pRL1JI (as, for example, in strain RBL1390), it is insensitive to small and also produces small (12, 17). To our knowledge, small is produced only by R. leguminosarum strains, and in nonproducing strains of this species, a gene for small production like that in strain 248 is present (12,17). Therefore, the presence of small is considered a characteristic of this species. Since another typical property of this species is symbiotic root nodule formation on certain leguminous plants, it is possible that both properties are related. However, a strain with a Tn5 insertion in the small gene(s) could induce formation of normal root nodules, which shows that the small gene is not required for root nodule formation (16). However, this does not exclude an ecological link between small production and the interaction of Rhizobium spp. with plants, since other genes may complement the lost function or the function is not essential. In order to detect its biological significance, small was extracted from the bacterial culture medium with chloroform (16) and identified chemically. The small molecule appeared to contain an N-acyl homoserine lactone structure, as known from quorum sensing signal molecules, which function as co-transcription factors in bacteria that often interact with higher organisms (reviewed by Fuqua et al. [10]). The implications of this finding are discussed. MATERIALS AND METHODSBacterial strains and growth conditions. The bacterial strains used in this study were the small-sensitive strain...

The present state-of-the-art of NMR in plant metabolomics is reviewed. Attention is paid to the different practical aspects of the application of NMR. The sample preparation, the measurement of the spectrum, quantitative aspects and data analysis are discussed. Each stage has its specific problems, which are pointed out and recommendations are made.

Resumo -A bioatividade de ácidos húmicos (AH) isolados de lodo da estação de tratamento de esgoto (AHL) e de vermicomposto (AHV) foi avaliada pela ação dessas substâncias sobre o transporte de prótons através da membrana plasmática de células de raízes de café e milho e sua relação com o desenvolvimento dessas espécies. Houve estímulo da área superficial radicular em ambas as espécies cultivadas com ambos AH, mostrando uma concentração ótima em torno de 40 mg L -1 . Nessa condição, os tratamentos com AHL e AHV estimularam a H + -ATPase de membrana plasmática em plântulas de café e milho. Os AHL foram mais efetivos na promoção desses efeitos do que os AHV. A modificação do perfil cromatográfico dos AH em solução antes e após o cultivo das plântulas revelou que a interação planta-AH promoveu uma redistribuição das massas moleculares dessas substâncias, sugerindo uma dinâmica de mobilização de subunidades funcionais dos AH por exsudatos das raízes. A análise estrutural dos AH detectou a presença de grupamentos de auxina. A análise comparativa da ação desses dois AH sobre as espécies representantes de plantas monocotiledôneas (milho) e dicotiledôneas (café) apontam para a ativação da H + -ATPase de plasmalema como possível marcador metabólico de bioatividade dos ácidos húmicos.Termos para indexação: Zea mays, Coffea arabica, lodo residual, ácidos orgânicos, vermicomposto. Humic acids bioactivity: effects on root development and on the plasma membrane proton pumpAbstract -The bioactivity of humic acids (HA) isolated from sludge of the station of sewer treatment (HAL) and from vermicompost (HAV) was evaluated through the action of those substances on primary transport of protons of the plasma membrane of coffee and corn root cells and its relationship with the development of those species. A stimulation in the superficial area of roots was observed for both species cultivated with both humic acids, exhibiting an optimum concentration, about 40 mg L -1 of HA. In this condition the treatment with HAL and HAV stimulated the plasma membrane H + -ATPase of corn and coffee roots. HAL were more effective to promote those effects than HAV. The modification of the chromatographic profile of the HA in solution before and after the cultivation of the seedlings revealed that the interaction plant-HA promoted a rearrangement of the average molecular weight of those substances suggesting a dynamic mobilization of bioactive subunits of the HA by plant exudates. The structural analysis of the HA has detected the presence of auxin groups. A comparative analysis of the action of those HA on the monocotyledonous (corn) and dicotyledonous (coffee) plants indicates to the activation of plasmallema H + -ATPase as a possible metabolic marker for bioactivity of humic acids.

Flavonoids released by roots of Vicia sativa subsp. nigra (V. sativa) activate nodulation genes of the homologous bacterium Rhizobium leguminosarum biovar viciae (R. l. viciae). Inoculation of V. sativa roots with infective R. l. viciae bacteria largely increases the nod gene-inducing ability of V. sativa root exudate (A.A.N. van Brussel et al., J Bact 172: 5394-5401). The present study showed that, in contrast to sterile roots and roots inoculated with R. l. viciae cured of its Sym plasmid, roots inoculated with R. l. viciae harboring its Sym plasmid released additional nod gene-inducing flavonoids. Using 1H-NMR, the structures of the major inducers released by inoculated roots, 6 flavanones and 2 chalcones, were elucidated. Roots extracts of (un)inoculated V. sativa contain 4 major non-inducing, most likely glycosylated, flavonoids. Therefore, the released flavonoids may either derive from the root flavonoids or inoculation with R. l. viciae activates de novo flavonoid biosynthesis.