Chronic diseases arise when there is mutual reinforcement of pathophysiological processes that cause an aberrant steady state. Such a sequence of events may underlie chronic constipation, which has been associated with dysbiosis of the gut. In this study we hypothesized that assemblage of microbial communities, directed by slow gastrointestinal transit, affects host function in a way that reinforces constipation and further maintains selection on microbial communities. In our study, we used two models â an opioidâinduced constipation model in mice, and a humanized mouse model where germâfree mice were colonized with stool from a patient with constipationâpredominant irritable bowel syndrome (IBSâC) in humans. We examined the impact of pharmacologically (loperamide)âinduced constipation (PIC) and IBSâC on the structural and functional profile of the gut microbiota. Germâfree (GF) mice were colonized with microbiota from PIC donor mice and IBSâC patients to determine how the microbiota affects the host. PIC and IBSâC promoted changes in the gut microbiota, characterized by increased relative abundance of Bacteroides ovatus and Parabacteroides distasonis in both models. PIC mice exhibited decreased luminal concentrations of butyrate in the cecum and altered metabolic profiles of the gut microbiota. Colonization of GF mice with PICâassociated mice cecal or human IBSâC fecal microbiota significantly increased GI transit time when compared to control microbiota recipients. IBSâCâassociated gut microbiota also impacted colonic contractile properties. Our findings support the concept that constipation is characterized by diseaseâassociated steady states caused by reinforcement of pathophysiological factors in hostâmicrobe interactions.